Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX3O95343 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX3O95343 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX3O95343 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.22■□□□□ 0.19
SIX3O95343 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
SIX3O95343 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 HYMAI-201ENST00000635591 3347 ntBASIC16.22■□□□□ 0.19
SIX3O95343 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SIX3O95343 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.22■□□□□ 0.19
SIX3O95343 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.22■□□□□ 0.19
SIX3O95343 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.22■□□□□ 0.19
SIX3O95343 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
SIX3O95343 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.22■□□□□ 0.19
SIX3O95343 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.22■□□□□ 0.19
SIX3O95343 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.22■□□□□ 0.19
SIX3O95343 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.22■□□□□ 0.19
SIX3O95343 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.22■□□□□ 0.19
SIX3O95343 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.22■□□□□ 0.19
SIX3O95343 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.22■□□□□ 0.19
SIX3O95343 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.22■□□□□ 0.19
SIX3O95343 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.22■□□□□ 0.19
SIX3O95343 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.22■□□□□ 0.19
SIX3O95343 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.22■□□□□ 0.19
SIX3O95343 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.22■□□□□ 0.19
SIX3O95343 AP001350.2-201ENST00000625104 1094 ntBASIC16.22■□□□□ 0.19
SIX3O95343 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
SIX3O95343 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.22■□□□□ 0.19
SIX3O95343 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX3O95343 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.22■□□□□ 0.19
SIX3O95343 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
SIX3O95343 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.21■□□□□ 0.19
SIX3O95343 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SIX3O95343 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.21■□□□□ 0.19
SIX3O95343 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.21■□□□□ 0.19
SIX3O95343 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.21■□□□□ 0.19
SIX3O95343 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.21■□□□□ 0.19
SIX3O95343 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SIX3O95343 HCG4-201ENST00000418983 998 ntBASIC16.21■□□□□ 0.19
SIX3O95343 KRT18P67-201ENST00000432816 1264 ntBASIC16.21■□□□□ 0.19
SIX3O95343 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.21■□□□□ 0.19
SIX3O95343 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.21■□□□□ 0.19
SIX3O95343 AC079781.3-201ENST00000449110 356 ntBASIC16.21■□□□□ 0.19
SIX3O95343 AC108073.2-201ENST00000464002 357 ntBASIC16.21■□□□□ 0.19
SIX3O95343 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.21■□□□□ 0.19
SIX3O95343 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.21■□□□□ 0.19
SIX3O95343 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.21■□□□□ 0.19
SIX3O95343 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.21■□□□□ 0.19
SIX3O95343 AL691432.3-201ENST00000621860 400 ntBASIC16.21■□□□□ 0.19
SIX3O95343 AC004790.2-201ENST00000623588 572 ntBASIC16.21■□□□□ 0.19
SIX3O95343 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.21■□□□□ 0.19
SIX3O95343 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SIX3O95343 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SIX3O95343 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SIX3O95343 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SIX3O95343 AL603832.2-201ENST00000566195 2125 ntBASIC16.21■□□□□ 0.18
SIX3O95343 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.21■□□□□ 0.18
SIX3O95343 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SIX3O95343 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SIX3O95343 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.21■□□□□ 0.18
SIX3O95343 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms