Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 AC015922.1-201ENST00000421102 1152 ntBASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 MPDU1-223ENST00000582151 728 ntBASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
TM9SF3Q9HD45 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 SLC25A1P3-201ENST00000395415 828 ntBASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 AL512638.1-201ENST00000457493 794 ntBASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 AC097493.3-201ENST00000509725 367 ntBASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 AC016396.2-201ENST00000562575 1417 ntBASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TM9SF3Q9HD45 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TM9SF3Q9HD45 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TM9SF3Q9HD45 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TM9SF3Q9HD45 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.56■□□□□ 0.24
TM9SF3Q9HD45 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.56■□□□□ 0.24
TM9SF3Q9HD45 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
TM9SF3Q9HD45 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TM9SF3Q9HD45 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TM9SF3Q9HD45 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TM9SF3Q9HD45 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.56■□□□□ 0.24
TM9SF3Q9HD45 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms