Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 AC087499.5-201ENST00000452760 1342 ntBASIC16.58■□□□□ 0.24
HMGB4Q8WW32 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.58■□□□□ 0.24
HMGB4Q8WW32 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 AC092068.3-201ENST00000587894 2016 ntBASIC16.57■□□□□ 0.24
HMGB4Q8WW32 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.57■□□□□ 0.24
HMGB4Q8WW32 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 AC007541.1-201ENST00000570282 1469 ntBASIC16.57■□□□□ 0.24
HMGB4Q8WW32 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 OR8S1-201ENST00000310194 1080 ntBASIC16.57■□□□□ 0.24
HMGB4Q8WW32 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 KRT17P7-201ENST00000451704 1104 ntBASIC16.57■□□□□ 0.24
HMGB4Q8WW32 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 AC105021.1-202ENST00000570572 669 ntBASIC16.57■□□□□ 0.24
HMGB4Q8WW32 AL132655.2-201ENST00000596276 594 ntBASIC16.57■□□□□ 0.24
HMGB4Q8WW32 AL844908.2-201ENST00000609461 460 ntBASIC16.57■□□□□ 0.24
HMGB4Q8WW32 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGB4Q8WW32 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.56■□□□□ 0.24
HMGB4Q8WW32 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB4Q8WW32 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB4Q8WW32 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms