Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ALOX12P2-203ENST00000570921 1945 ntBASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 SERF2-207ENST00000409614 582 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 TCAF1P1-201ENST00000414990 2232 ntBASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28AQ8IWP9 AL390755.1-201ENST00000623716 2027 ntBASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 Z82170.1-201ENST00000625081 3192 ntBASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 RPPH1-201ENST00000516869 333 ntBASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 MIR4651-201ENST00000582622 73 ntBASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms