Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RHBDL3P58872 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RHBDL3P58872 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
RHBDL3P58872 IMPDH1P4-201ENST00000445028 1534 ntBASIC19.42■□□□□ 0.7
RHBDL3P58872 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC19.42■□□□□ 0.7
RHBDL3P58872 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.42■□□□□ 0.7
RHBDL3P58872 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RHBDL3P58872 U82695.1-201ENST00000635752 1889 ntBASIC19.42■□□□□ 0.7
RHBDL3P58872 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.42■□□□□ 0.7
RHBDL3P58872 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RHBDL3P58872 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
RHBDL3P58872 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
RHBDL3P58872 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC19.42■□□□□ 0.7
RHBDL3P58872 GAPDHP21-201ENST00000450301 1010 ntBASIC19.42■□□□□ 0.7
RHBDL3P58872 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC19.42■□□□□ 0.7
RHBDL3P58872 COQ6-210ENST00000554920 649 ntTSL 3 BASIC19.42■□□□□ 0.7
RHBDL3P58872 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC19.42■□□□□ 0.7
RHBDL3P58872 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC19.42■□□□□ 0.7
RHBDL3P58872 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.42■□□□□ 0.7
RHBDL3P58872 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.42■□□□□ 0.7
RHBDL3P58872 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RHBDL3P58872 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.42■□□□□ 0.7
RHBDL3P58872 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RHBDL3P58872 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RHBDL3P58872 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.41■□□□□ 0.7
RHBDL3P58872 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RHBDL3P58872 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC19.41■□□□□ 0.7
RHBDL3P58872 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.41■□□□□ 0.7
RHBDL3P58872 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC19.41■□□□□ 0.7
RHBDL3P58872 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC19.41■□□□□ 0.7
RHBDL3P58872 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 RN7SL618P-201ENST00000477850 296 ntBASIC19.41■□□□□ 0.7
RHBDL3P58872 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RHBDL3P58872 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC19.41■□□□□ 0.7
RHBDL3P58872 AC044860.1-202ENST00000559481 777 ntBASIC19.41■□□□□ 0.7
RHBDL3P58872 AC004233.3-201ENST00000607794 1269 ntBASIC19.41■□□□□ 0.7
RHBDL3P58872 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.41■□□□□ 0.7
RHBDL3P58872 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
RHBDL3P58872 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
RHBDL3P58872 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC19.41■□□□□ 0.7
RHBDL3P58872 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RHBDL3P58872 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RHBDL3P58872 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 BTBD7P1-201ENST00000447253 1453 ntBASIC19.41■□□□□ 0.7
RHBDL3P58872 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
RHBDL3P58872 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
RHBDL3P58872 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RHBDL3P58872 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.4■□□□□ 0.7
RHBDL3P58872 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
RHBDL3P58872 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.4■□□□□ 0.7
RHBDL3P58872 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.4■□□□□ 0.7
RHBDL3P58872 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.4■□□□□ 0.7
RHBDL3P58872 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
RHBDL3P58872 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC19.4■□□□□ 0.7
RHBDL3P58872 SPDYE18-201ENST00000510091 1050 ntBASIC19.4■□□□□ 0.7
RHBDL3P58872 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 API5-211ENST00000534695 560 ntTSL 5 BASIC19.4■□□□□ 0.7
RHBDL3P58872 AC135586.1-201ENST00000539323 574 ntBASIC19.4■□□□□ 0.7
RHBDL3P58872 AL596325.1-201ENST00000563991 1082 ntBASIC19.4■□□□□ 0.7
RHBDL3P58872 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC19.4■□□□□ 0.7
RHBDL3P58872 AL033527.5-202ENST00000641632 1098 ntBASIC19.4■□□□□ 0.7
RHBDL3P58872 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 AC063926.2-201ENST00000623766 1308 ntBASIC19.4■□□□□ 0.7
RHBDL3P58872 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RHBDL3P58872 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
RHBDL3P58872 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
RHBDL3P58872 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.4■□□□□ 0.7
RHBDL3P58872 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
RHBDL3P58872 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC19.4■□□□□ 0.7
RHBDL3P58872 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RHBDL3P58872 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RHBDL3P58872 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
RHBDL3P58872 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.39■□□□□ 0.7
RHBDL3P58872 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
RHBDL3P58872 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms