Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.46■□□□□ 0.39
BDNFP23560 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
BDNFP23560 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.46■□□□□ 0.39
BDNFP23560 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.46■□□□□ 0.39
BDNFP23560 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.46■□□□□ 0.39
BDNFP23560 AC026150.2-201ENST00000564693 1156 ntBASIC17.46■□□□□ 0.39
BDNFP23560 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
BDNFP23560 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.46■□□□□ 0.39
BDNFP23560 AC073389.1-201ENST00000595595 795 ntBASIC17.46■□□□□ 0.39
BDNFP23560 AP001059.3-201ENST00000619053 235 ntBASIC17.46■□□□□ 0.39
BDNFP23560 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
BDNFP23560 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
BDNFP23560 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
BDNFP23560 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
BDNFP23560 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
BDNFP23560 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
BDNFP23560 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.46■□□□□ 0.39
BDNFP23560 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.46■□□□□ 0.39
BDNFP23560 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
BDNFP23560 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.46■□□□□ 0.38
BDNFP23560 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
BDNFP23560 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.45■□□□□ 0.38
BDNFP23560 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.45■□□□□ 0.38
BDNFP23560 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.45■□□□□ 0.38
BDNFP23560 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.45■□□□□ 0.38
BDNFP23560 SPDYE14P-201ENST00000442619 822 ntBASIC17.45■□□□□ 0.38
BDNFP23560 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 HLA-J-202ENST00000469281 1241 ntBASIC17.45■□□□□ 0.38
BDNFP23560 ALG1L8P-201ENST00000533887 760 ntBASIC17.45■□□□□ 0.38
BDNFP23560 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.45■□□□□ 0.38
BDNFP23560 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.45■□□□□ 0.38
BDNFP23560 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
BDNFP23560 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
BDNFP23560 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BDNFP23560 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.45■□□□□ 0.38
BDNFP23560 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.45■□□□□ 0.38
BDNFP23560 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC17.44■□□□□ 0.38
BDNFP23560 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 HLA-A-202ENST00000376806 1854 ntBASIC17.44■□□□□ 0.38
BDNFP23560 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
BDNFP23560 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.44■□□□□ 0.38
BDNFP23560 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.44■□□□□ 0.38
BDNFP23560 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.44■□□□□ 0.38
BDNFP23560 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.44■□□□□ 0.38
BDNFP23560 FOXO1B-201ENST00000504678 1527 ntBASIC17.44■□□□□ 0.38
BDNFP23560 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 AL512356.2-201ENST00000546955 174 ntBASIC17.44■□□□□ 0.38
BDNFP23560 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.44■□□□□ 0.38
BDNFP23560 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 AC093512.1-201ENST00000617969 520 ntBASIC17.44■□□□□ 0.38
BDNFP23560 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.44■□□□□ 0.38
BDNFP23560 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.44■□□□□ 0.38
BDNFP23560 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.44■□□□□ 0.38
BDNFP23560 PRORSD1P-202ENST00000563365 2154 ntBASIC17.44■□□□□ 0.38
BDNFP23560 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.44■□□□□ 0.38
BDNFP23560 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
BDNFP23560 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.44■□□□□ 0.38
BDNFP23560 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
BDNFP23560 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.44■□□□□ 0.38
BDNFP23560 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.44■□□□□ 0.38
BDNFP23560 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BDNFP23560 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms