Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 AC002056.1-201ENST00000395613 760 ntBASIC16.8■□□□□ 0.28
HLA-DQB2P05538 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 MCCD1P2-201ENST00000423228 335 ntBASIC16.8■□□□□ 0.28
HLA-DQB2P05538 AC004832.2-201ENST00000426397 482 ntBASIC16.8■□□□□ 0.28
HLA-DQB2P05538 FAM58CP-201ENST00000435741 640 ntBASIC16.8■□□□□ 0.28
HLA-DQB2P05538 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 AC112191.1-201ENST00000523689 701 ntBASIC16.8■□□□□ 0.28
HLA-DQB2P05538 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DQB2P05538 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DQB2P05538 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 POU5F1P6-201ENST00000466990 990 ntBASIC16.78■□□□□ 0.28
HLA-DQB2P05538 ALG1L5P-201ENST00000482043 771 ntBASIC16.78■□□□□ 0.28
HLA-DQB2P05538 KRT18P34-201ENST00000488218 1270 ntBASIC16.78■□□□□ 0.28
HLA-DQB2P05538 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HLA-DQB2P05538 AL161645.1-201ENST00000622716 1255 ntBASIC16.78■□□□□ 0.28
HLA-DQB2P05538 AC092902.6-201ENST00000641783 218 ntBASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms