Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
RAPGEF3O95398 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RAPGEF3O95398 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
RAPGEF3O95398 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
RAPGEF3O95398 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC24.43■■□□□ 1.5
RAPGEF3O95398 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RAPGEF3O95398 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RAPGEF3O95398 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 AC016694.1-201ENST00000434179 700 ntBASIC24.42■■□□□ 1.5
RAPGEF3O95398 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 AC079316.1-201ENST00000548397 411 ntBASIC24.42■■□□□ 1.5
RAPGEF3O95398 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC24.42■■□□□ 1.5
RAPGEF3O95398 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RAPGEF3O95398 AL512652.2-201ENST00000625156 1716 ntBASIC24.41■■□□□ 1.5
RAPGEF3O95398 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RAPGEF3O95398 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
RAPGEF3O95398 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
RAPGEF3O95398 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RAPGEF3O95398 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RAPGEF3O95398 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RAPGEF3O95398 AC104306.2-201ENST00000451877 341 ntBASIC24.41■■□□□ 1.5
RAPGEF3O95398 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 AL049840.4-201ENST00000602422 811 ntBASIC24.41■■□□□ 1.5
RAPGEF3O95398 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
RAPGEF3O95398 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RAPGEF3O95398 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC24.41■■□□□ 1.5
RAPGEF3O95398 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RAPGEF3O95398 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
RAPGEF3O95398 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RAPGEF3O95398 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RAPGEF3O95398 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RAPGEF3O95398 BAATP1-201ENST00000412284 1225 ntBASIC24.4■■□□□ 1.5
RAPGEF3O95398 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RAPGEF3O95398 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RAPGEF3O95398 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 PRKN-211ENST00000615065 261 ntTSL 5 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 RHOXF1P1-202ENST00000635473 501 ntBASIC24.4■■□□□ 1.5
RAPGEF3O95398 HADH-212ENST00000638621 741 ntTSL 5 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RAPGEF3O95398 AL354751.1-201ENST00000412768 1863 ntBASIC24.4■■□□□ 1.5
RAPGEF3O95398 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RAPGEF3O95398 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC24.4■■□□□ 1.5
RAPGEF3O95398 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC24.4■■□□□ 1.5
RAPGEF3O95398 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
RAPGEF3O95398 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC24.39■■□□□ 1.5
RAPGEF3O95398 USE1-206ENST00000595101 1776 ntTSL 2 BASIC24.39■■□□□ 1.5
RAPGEF3O95398 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
RAPGEF3O95398 TNXA-203ENST00000507684 2038 ntBASIC24.39■■□□□ 1.5
RAPGEF3O95398 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
RAPGEF3O95398 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC24.39■■□□□ 1.5
RAPGEF3O95398 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
RAPGEF3O95398 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RAPGEF3O95398 GGCT-203ENST00000409144 836 ntTSL 2 BASIC24.39■■□□□ 1.49
RAPGEF3O95398 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC24.39■■□□□ 1.49
RAPGEF3O95398 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
RAPGEF3O95398 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC24.39■■□□□ 1.49
RAPGEF3O95398 OARD1-212ENST00000482515 832 ntTSL 2 BASIC24.39■■□□□ 1.49
RAPGEF3O95398 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
RAPGEF3O95398 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC24.39■■□□□ 1.49
RAPGEF3O95398 MIR4722-201ENST00000578292 60 ntBASIC24.39■■□□□ 1.49
RAPGEF3O95398 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC24.39■■□□□ 1.49
RAPGEF3O95398 BICD1-207ENST00000551848 1962 ntBASIC24.39■■□□□ 1.49
RAPGEF3O95398 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RAPGEF3O95398 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms