Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS4BO75351 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
VPS4BO75351 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS4BO75351 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS4BO75351 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS4BO75351 AC092364.2-201ENST00000596710 2692 ntBASIC16.32■□□□□ 0.2
VPS4BO75351 LINC02199-201ENST00000506655 2702 ntBASIC16.32■□□□□ 0.2
VPS4BO75351 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VPS4BO75351 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VPS4BO75351 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS4BO75351 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS4BO75351 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
VPS4BO75351 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
VPS4BO75351 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 AC211486.1-202ENST00000416371 468 ntBASIC16.32■□□□□ 0.2
VPS4BO75351 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
VPS4BO75351 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
VPS4BO75351 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
VPS4BO75351 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VPS4BO75351 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 AC211476.1-201ENST00000503899 468 ntBASIC16.32■□□□□ 0.2
VPS4BO75351 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS4BO75351 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS4BO75351 SART3-203ENST00000546611 1184 ntBASIC16.32■□□□□ 0.2
VPS4BO75351 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS4BO75351 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS4BO75351 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS4BO75351 AC004817.3-201ENST00000602957 2129 ntBASIC16.32■□□□□ 0.2
VPS4BO75351 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS4BO75351 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
VPS4BO75351 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
VPS4BO75351 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS4BO75351 AC073592.4-201ENST00000623827 446 ntBASIC16.32■□□□□ 0.2
VPS4BO75351 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS4BO75351 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
VPS4BO75351 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS4BO75351 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS4BO75351 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS4BO75351 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS4BO75351 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 KRT18P28-201ENST00000453838 1332 ntBASIC16.31■□□□□ 0.2
VPS4BO75351 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS4BO75351 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 AC004832.2-201ENST00000426397 482 ntBASIC16.31■□□□□ 0.2
VPS4BO75351 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS4BO75351 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.31■□□□□ 0.2
VPS4BO75351 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS4BO75351 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.31■□□□□ 0.2
VPS4BO75351 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS4BO75351 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS4BO75351 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS4BO75351 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS4BO75351 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS4BO75351 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS4BO75351 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
VPS4BO75351 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VPS4BO75351 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS4BO75351 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VPS4BO75351 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4BO75351 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
VPS4BO75351 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
VPS4BO75351 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS4BO75351 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4BO75351 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms