Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.63■□□□□ 0.25
SHOX2O60902 TSPY15P-201ENST00000457163 923 ntBASIC16.63■□□□□ 0.25
SHOX2O60902 SNORA78-201ENST00000459373 127 ntBASIC16.63■□□□□ 0.25
SHOX2O60902 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.63■□□□□ 0.25
SHOX2O60902 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.63■□□□□ 0.25
SHOX2O60902 C2orf69P3-201ENST00000565542 1120 ntBASIC16.63■□□□□ 0.25
SHOX2O60902 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 NEK4P2-201ENST00000580004 1012 ntBASIC16.63■□□□□ 0.25
SHOX2O60902 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.63■□□□□ 0.25
SHOX2O60902 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.63■□□□□ 0.25
SHOX2O60902 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SHOX2O60902 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SHOX2O60902 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SHOX2O60902 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
SHOX2O60902 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SHOX2O60902 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 CYP2D8P-201ENST00000433633 1490 ntBASIC16.62■□□□□ 0.25
SHOX2O60902 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.62■□□□□ 0.25
SHOX2O60902 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.62■□□□□ 0.25
SHOX2O60902 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SHOX2O60902 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SHOX2O60902 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.62■□□□□ 0.25
SHOX2O60902 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.62■□□□□ 0.25
SHOX2O60902 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.62■□□□□ 0.25
SHOX2O60902 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SHOX2O60902 AC103564.2-201ENST00000432853 1299 ntBASIC16.62■□□□□ 0.25
SHOX2O60902 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.62■□□□□ 0.25
SHOX2O60902 STK19B-204ENST00000512515 211 ntBASIC16.62■□□□□ 0.25
SHOX2O60902 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.62■□□□□ 0.25
SHOX2O60902 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
SHOX2O60902 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 AC010653.2-201ENST00000623505 997 ntBASIC16.62■□□□□ 0.25
SHOX2O60902 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.62■□□□□ 0.25
SHOX2O60902 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.62■□□□□ 0.25
SHOX2O60902 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.62■□□□□ 0.25
SHOX2O60902 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SHOX2O60902 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SHOX2O60902 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 PCGF3-213ENST00000620529 1899 ntBASIC16.61■□□□□ 0.25
SHOX2O60902 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
SHOX2O60902 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SHOX2O60902 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC16.61■□□□□ 0.25
SHOX2O60902 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.61■□□□□ 0.25
SHOX2O60902 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SHOX2O60902 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SHOX2O60902 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.61■□□□□ 0.25
SHOX2O60902 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.61■□□□□ 0.25
SHOX2O60902 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.61■□□□□ 0.25
SHOX2O60902 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.61■□□□□ 0.25
SHOX2O60902 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SHOX2O60902 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms