Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
LMX1BO60663 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
LMX1BO60663 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.64□□□□□ -0.07
LMX1BO60663 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC14.64□□□□□ -0.07
LMX1BO60663 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.64□□□□□ -0.07
LMX1BO60663 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC14.64□□□□□ -0.07
LMX1BO60663 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC14.64□□□□□ -0.07
LMX1BO60663 AC005593.1-201ENST00000624894 515 ntBASIC14.64□□□□□ -0.07
LMX1BO60663 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.64□□□□□ -0.07
LMX1BO60663 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.64□□□□□ -0.07
LMX1BO60663 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC14.64□□□□□ -0.07
LMX1BO60663 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.64□□□□□ -0.07
LMX1BO60663 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
LMX1BO60663 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
LMX1BO60663 ME2P1-201ENST00000426028 1970 ntBASIC14.64□□□□□ -0.07
LMX1BO60663 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.64□□□□□ -0.07
LMX1BO60663 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.63□□□□□ -0.07
LMX1BO60663 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
LMX1BO60663 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
LMX1BO60663 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
LMX1BO60663 AC023274.1-201ENST00000418278 595 ntBASIC14.63□□□□□ -0.07
LMX1BO60663 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.63□□□□□ -0.07
LMX1BO60663 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC14.63□□□□□ -0.07
LMX1BO60663 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.63□□□□□ -0.07
LMX1BO60663 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.63□□□□□ -0.07
LMX1BO60663 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 AL022326.1-202ENST00000641533 845 ntBASIC14.63□□□□□ -0.07
LMX1BO60663 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.63□□□□□ -0.07
LMX1BO60663 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.63□□□□□ -0.07
LMX1BO60663 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LMX1BO60663 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.63□□□□□ -0.07
LMX1BO60663 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.63□□□□□ -0.07
LMX1BO60663 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
LMX1BO60663 AC006277.1-201ENST00000624348 1610 ntBASIC14.63□□□□□ -0.07
LMX1BO60663 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.62□□□□□ -0.07
LMX1BO60663 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
LMX1BO60663 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
LMX1BO60663 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
LMX1BO60663 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.62□□□□□ -0.07
LMX1BO60663 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
LMX1BO60663 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
LMX1BO60663 AC211486.1-202ENST00000416371 468 ntBASIC14.62□□□□□ -0.07
LMX1BO60663 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.62□□□□□ -0.07
LMX1BO60663 AC009947.1-201ENST00000444350 727 ntBASIC14.62□□□□□ -0.07
LMX1BO60663 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.62□□□□□ -0.07
LMX1BO60663 AC211476.1-201ENST00000503899 468 ntBASIC14.62□□□□□ -0.07
LMX1BO60663 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
LMX1BO60663 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.62□□□□□ -0.07
LMX1BO60663 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.62□□□□□ -0.07
LMX1BO60663 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC14.62□□□□□ -0.07
LMX1BO60663 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.62□□□□□ -0.07
LMX1BO60663 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.62□□□□□ -0.07
LMX1BO60663 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.62□□□□□ -0.07
LMX1BO60663 AC006557.2-201ENST00000592985 1240 ntBASIC14.62□□□□□ -0.07
LMX1BO60663 AL671710.1-201ENST00000610245 2349 ntBASIC14.62□□□□□ -0.07
LMX1BO60663 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.62□□□□□ -0.07
LMX1BO60663 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms