Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 IGHV3-65-201ENST00000523210 341 ntBASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.36■□□□□ 0.37
PCDHA3Q9Y5H8 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHA3Q9Y5H8 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 RNPS1P1-201ENST00000507437 918 ntBASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 AC103702.1-201ENST00000548801 2630 ntBASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms