Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 SCARNA2-201ENST00000458748 420 ntBASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 KRT18P56-201ENST00000507275 550 ntBASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 CLEC4GP1-201ENST00000596555 870 ntBASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 MTHFR-217ENST00000641820 1569 ntBASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC39Q9UFE4 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 NFIC-211ENST00000641145 8399 ntBASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 AC064862.7-201ENST00000604520 867 ntBASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC39Q9UFE4 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 SAPCD2P3-201ENST00000455031 850 ntBASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 FGFR3P6-201ENST00000457012 610 ntBASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 AL353135.1-201ENST00000606729 504 ntBASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 AL589182.2-201ENST00000619332 1049 ntBASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 AC012313.10-201ENST00000623509 926 ntBASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC39Q9UFE4 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 AC063926.3-201ENST00000624734 5658 ntBASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 HLA-A-202ENST00000376806 1854 ntBASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
CCDC39Q9UFE4 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms