Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.75□□□□□ -0.05
MMP28Q9H239 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.75□□□□□ -0.05
MMP28Q9H239 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
MMP28Q9H239 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.75□□□□□ -0.05
MMP28Q9H239 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC14.75□□□□□ -0.05
MMP28Q9H239 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
MMP28Q9H239 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MMP28Q9H239 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 IER3-202ENST00000376377 1350 ntBASIC14.74□□□□□ -0.05
MMP28Q9H239 AC023908.3-201ENST00000564211 3047 ntBASIC14.74□□□□□ -0.05
MMP28Q9H239 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 PPT1-215ENST00000641471 2368 ntBASIC14.74□□□□□ -0.05
MMP28Q9H239 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.74□□□□□ -0.05
MMP28Q9H239 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.74□□□□□ -0.05
MMP28Q9H239 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.74□□□□□ -0.05
MMP28Q9H239 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
MMP28Q9H239 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC14.74□□□□□ -0.05
MMP28Q9H239 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.74□□□□□ -0.05
MMP28Q9H239 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.74□□□□□ -0.05
MMP28Q9H239 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.74□□□□□ -0.05
MMP28Q9H239 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 AL596087.1-201ENST00000400979 1969 ntBASIC14.74□□□□□ -0.05
MMP28Q9H239 ME2P1-201ENST00000426028 1970 ntBASIC14.74□□□□□ -0.05
MMP28Q9H239 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.74□□□□□ -0.05
MMP28Q9H239 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
MMP28Q9H239 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
MMP28Q9H239 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.74□□□□□ -0.05
MMP28Q9H239 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
MMP28Q9H239 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MMP28Q9H239 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC14.73□□□□□ -0.05
MMP28Q9H239 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.73□□□□□ -0.05
MMP28Q9H239 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
MMP28Q9H239 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.73□□□□□ -0.05
MMP28Q9H239 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
MMP28Q9H239 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
MMP28Q9H239 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC14.73□□□□□ -0.05
MMP28Q9H239 IGHGP-201ENST00000390555 1178 ntBASIC14.73□□□□□ -0.05
MMP28Q9H239 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC14.73□□□□□ -0.05
MMP28Q9H239 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.73□□□□□ -0.05
MMP28Q9H239 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MMP28Q9H239 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.73□□□□□ -0.05
MMP28Q9H239 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC14.73□□□□□ -0.05
MMP28Q9H239 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC14.73□□□□□ -0.05
MMP28Q9H239 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
MMP28Q9H239 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms