Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.64■□□□□ 0.25
CPNE1Q99829 RPS15P9-201ENST00000494093 319 ntBASIC16.64■□□□□ 0.25
CPNE1Q99829 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.64■□□□□ 0.25
CPNE1Q99829 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.64■□□□□ 0.25
CPNE1Q99829 PRELID1P1-202ENST00000567272 903 ntBASIC16.64■□□□□ 0.25
CPNE1Q99829 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.64■□□□□ 0.25
CPNE1Q99829 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.64■□□□□ 0.25
CPNE1Q99829 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.64■□□□□ 0.25
CPNE1Q99829 LINC01711-201ENST00000598340 967 ntBASIC16.64■□□□□ 0.25
CPNE1Q99829 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.64■□□□□ 0.25
CPNE1Q99829 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CPNE1Q99829 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CPNE1Q99829 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CPNE1Q99829 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CPNE1Q99829 AC105917.1-201ENST00000506637 2539 ntBASIC16.64■□□□□ 0.25
CPNE1Q99829 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CPNE1Q99829 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.64■□□□□ 0.25
CPNE1Q99829 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CPNE1Q99829 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CPNE1Q99829 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CPNE1Q99829 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CPNE1Q99829 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CPNE1Q99829 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.64■□□□□ 0.25
CPNE1Q99829 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CPNE1Q99829 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CPNE1Q99829 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.63■□□□□ 0.25
CPNE1Q99829 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
CPNE1Q99829 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.63■□□□□ 0.25
CPNE1Q99829 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.63■□□□□ 0.25
CPNE1Q99829 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.63■□□□□ 0.25
CPNE1Q99829 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 AKR1C7P-201ENST00000305623 895 ntBASIC16.63■□□□□ 0.25
CPNE1Q99829 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.63■□□□□ 0.25
CPNE1Q99829 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.63■□□□□ 0.25
CPNE1Q99829 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.63■□□□□ 0.25
CPNE1Q99829 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.63■□□□□ 0.25
CPNE1Q99829 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.63■□□□□ 0.25
CPNE1Q99829 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 AC010654.1-201ENST00000615722 808 ntBASIC16.63■□□□□ 0.25
CPNE1Q99829 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.63■□□□□ 0.25
CPNE1Q99829 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.63■□□□□ 0.25
CPNE1Q99829 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CPNE1Q99829 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CPNE1Q99829 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.62■□□□□ 0.25
CPNE1Q99829 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.62■□□□□ 0.25
CPNE1Q99829 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.62■□□□□ 0.25
CPNE1Q99829 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.62■□□□□ 0.25
CPNE1Q99829 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
CPNE1Q99829 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.62■□□□□ 0.25
CPNE1Q99829 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.62■□□□□ 0.25
CPNE1Q99829 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.62■□□□□ 0.25
CPNE1Q99829 KRT18P27-201ENST00000427733 1299 ntBASIC16.62■□□□□ 0.25
CPNE1Q99829 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
CPNE1Q99829 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.62■□□□□ 0.25
CPNE1Q99829 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.62■□□□□ 0.25
CPNE1Q99829 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.62■□□□□ 0.25
CPNE1Q99829 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CPNE1Q99829 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.62■□□□□ 0.25
CPNE1Q99829 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE1Q99829 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE1Q99829 AC132872.4-202ENST00000622924 2756 ntBASIC16.61■□□□□ 0.25
CPNE1Q99829 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.61■□□□□ 0.25
CPNE1Q99829 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CPNE1Q99829 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE1Q99829 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CPNE1Q99829 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE1Q99829 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE1Q99829 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE1Q99829 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE1Q99829 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms