Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF43Q68DV7 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
RNF43Q68DV7 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF43Q68DV7 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF43Q68DV7 AC092068.3-201ENST00000587894 2016 ntBASIC17.45■□□□□ 0.38
RNF43Q68DV7 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF43Q68DV7 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.45■□□□□ 0.38
RNF43Q68DV7 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF43Q68DV7 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF43Q68DV7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.45■□□□□ 0.38
RNF43Q68DV7 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.45■□□□□ 0.38
RNF43Q68DV7 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.44■□□□□ 0.38
RNF43Q68DV7 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 FRMD8P1-201ENST00000440433 1524 ntBASIC17.44■□□□□ 0.38
RNF43Q68DV7 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 TSEN15P1-201ENST00000423257 515 ntBASIC17.44■□□□□ 0.38
RNF43Q68DV7 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 AC074386.1-202ENST00000463561 864 ntBASIC17.44■□□□□ 0.38
RNF43Q68DV7 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 AL096865.1-201ENST00000606796 927 ntBASIC17.44■□□□□ 0.38
RNF43Q68DV7 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
RNF43Q68DV7 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF43Q68DV7 AL513523.2-202ENST00000427283 2040 ntBASIC17.43■□□□□ 0.38
RNF43Q68DV7 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 BCRP1-201ENST00000444246 691 ntBASIC17.43■□□□□ 0.38
RNF43Q68DV7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 AC027612.4-201ENST00000605371 583 ntBASIC17.43■□□□□ 0.38
RNF43Q68DV7 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF43Q68DV7 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF43Q68DV7 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF43Q68DV7 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF43Q68DV7 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF43Q68DV7 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 AC005412.3-201ENST00000580309 715 ntBASIC17.42■□□□□ 0.38
RNF43Q68DV7 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms