Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 CXCL1P1-201ENST00000502804 216 ntBASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 AL078644.1-201ENST00000609881 752 ntBASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 AC096734.2-201ENST00000562054 433 ntBASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 AC005052.1-201ENST00000625181 2492 ntBASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 PCDH8P1-201ENST00000428983 2773 ntBASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 AC012569.1-201ENST00000591191 1524 ntBASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
PTCHD3Q3KNS1 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 AL031731.1-201ENST00000642131 2094 ntBASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PTCHD3Q3KNS1 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms