Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.65■□□□□ 0.42
SOX4Q06945 MIR3197-201ENST00000582241 73 ntBASIC17.65■□□□□ 0.42
SOX4Q06945 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.65■□□□□ 0.42
SOX4Q06945 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.65■□□□□ 0.42
SOX4Q06945 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX4Q06945 AL589702.1-201ENST00000641229 1509 ntBASIC17.65■□□□□ 0.42
SOX4Q06945 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.65■□□□□ 0.42
SOX4Q06945 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX4Q06945 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX4Q06945 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX4Q06945 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SOX4Q06945 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SOX4Q06945 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
SOX4Q06945 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SOX4Q06945 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SOX4Q06945 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SOX4Q06945 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SOX4Q06945 AC011676.5-201ENST00000624864 2660 ntBASIC17.64■□□□□ 0.41
SOX4Q06945 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SOX4Q06945 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.64■□□□□ 0.41
SOX4Q06945 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SOX4Q06945 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 IGHV3-42-201ENST00000520410 361 ntBASIC17.64■□□□□ 0.41
SOX4Q06945 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.64■□□□□ 0.41
SOX4Q06945 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.64■□□□□ 0.41
SOX4Q06945 AC092364.2-202ENST00000597012 1073 ntBASIC17.64■□□□□ 0.41
SOX4Q06945 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.64■□□□□ 0.41
SOX4Q06945 SPDYE12P-201ENST00000618416 771 ntBASIC17.64■□□□□ 0.41
SOX4Q06945 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SOX4Q06945 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.64■□□□□ 0.41
SOX4Q06945 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.64■□□□□ 0.41
SOX4Q06945 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX4Q06945 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
SOX4Q06945 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.63■□□□□ 0.41
SOX4Q06945 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.63■□□□□ 0.41
SOX4Q06945 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SOX4Q06945 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.63■□□□□ 0.41
SOX4Q06945 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.63■□□□□ 0.41
SOX4Q06945 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.63■□□□□ 0.41
SOX4Q06945 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.63■□□□□ 0.41
SOX4Q06945 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.63■□□□□ 0.41
SOX4Q06945 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SOX4Q06945 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.63■□□□□ 0.41
SOX4Q06945 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 AGGF1P2-201ENST00000426656 2106 ntBASIC17.63■□□□□ 0.41
SOX4Q06945 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SOX4Q06945 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.63■□□□□ 0.41
SOX4Q06945 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SOX4Q06945 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.63■□□□□ 0.41
SOX4Q06945 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.63■□□□□ 0.41
SOX4Q06945 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SOX4Q06945 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SOX4Q06945 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.62■□□□□ 0.41
SOX4Q06945 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX4Q06945 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
SOX4Q06945 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX4Q06945 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX4Q06945 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX4Q06945 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX4Q06945 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SOX4Q06945 MIR661-201ENST00000384842 89 ntBASIC17.62■□□□□ 0.41
SOX4Q06945 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.62■□□□□ 0.41
SOX4Q06945 BASP1P1-201ENST00000430708 665 ntBASIC17.62■□□□□ 0.41
SOX4Q06945 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.62■□□□□ 0.41
SOX4Q06945 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX4Q06945 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.62■□□□□ 0.41
SOX4Q06945 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX4Q06945 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.62■□□□□ 0.41
SOX4Q06945 AJ011932.1-201ENST00000621707 465 ntBASIC17.62■□□□□ 0.41
SOX4Q06945 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SOX4Q06945 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX4Q06945 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms