Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.7■□□□□ 0.58
TPM4P67936 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TPM4P67936 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.7■□□□□ 0.58
TPM4P67936 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.7■□□□□ 0.58
TPM4P67936 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.7■□□□□ 0.58
TPM4P67936 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.7■□□□□ 0.58
TPM4P67936 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.7■□□□□ 0.58
TPM4P67936 AC012306.2-201ENST00000609350 630 ntBASIC18.7■□□□□ 0.58
TPM4P67936 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
TPM4P67936 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM4P67936 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TPM4P67936 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.7■□□□□ 0.58
TPM4P67936 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TPM4P67936 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
TPM4P67936 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TPM4P67936 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.7■□□□□ 0.58
TPM4P67936 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM4P67936 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
TPM4P67936 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TPM4P67936 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.69■□□□□ 0.58
TPM4P67936 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
TPM4P67936 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.69■□□□□ 0.58
TPM4P67936 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
TPM4P67936 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
TPM4P67936 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.69■□□□□ 0.58
TPM4P67936 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.69■□□□□ 0.58
TPM4P67936 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.69■□□□□ 0.58
TPM4P67936 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TPM4P67936 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TPM4P67936 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.69■□□□□ 0.58
TPM4P67936 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
TPM4P67936 AC148477.5-201ENST00000625164 1645 ntBASIC18.69■□□□□ 0.58
TPM4P67936 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.69■□□□□ 0.58
TPM4P67936 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TPM4P67936 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TPM4P67936 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.69■□□□□ 0.58
TPM4P67936 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM4P67936 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TPM4P67936 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 LINC00982-205ENST00000420957 435 ntBASIC18.68■□□□□ 0.58
TPM4P67936 MINOS1P3-201ENST00000457048 203 ntBASIC18.68■□□□□ 0.58
TPM4P67936 AC063952.2-201ENST00000498792 1227 ntBASIC18.68■□□□□ 0.58
TPM4P67936 AC093827.2-201ENST00000512654 315 ntBASIC18.68■□□□□ 0.58
TPM4P67936 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.68■□□□□ 0.58
TPM4P67936 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
TPM4P67936 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.68■□□□□ 0.58
TPM4P67936 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.68■□□□□ 0.58
TPM4P67936 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.68■□□□□ 0.58
TPM4P67936 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.68■□□□□ 0.58
TPM4P67936 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.68■□□□□ 0.58
TPM4P67936 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.68■□□□□ 0.58
TPM4P67936 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TPM4P67936 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.67■□□□□ 0.58
TPM4P67936 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC18.67■□□□□ 0.58
TPM4P67936 AC006449.6-201ENST00000612330 2296 ntBASIC18.67■□□□□ 0.58
TPM4P67936 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.67■□□□□ 0.58
TPM4P67936 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
TPM4P67936 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.67■□□□□ 0.58
TPM4P67936 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TPM4P67936 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms