Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.87□□□□□ -0.03
CLRN1P58418 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CLRN1P58418 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.87□□□□□ -0.03
CLRN1P58418 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 AC012569.1-201ENST00000591191 1524 ntBASIC14.87□□□□□ -0.03
CLRN1P58418 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CLRN1P58418 AL671710.1-201ENST00000610245 2349 ntBASIC14.87□□□□□ -0.03
CLRN1P58418 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CLRN1P58418 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC14.87□□□□□ -0.03
CLRN1P58418 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.87□□□□□ -0.03
CLRN1P58418 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 CXCL1P1-201ENST00000502804 216 ntBASIC14.87□□□□□ -0.03
CLRN1P58418 RNA5SP415-201ENST00000517246 115 ntBASIC14.87□□□□□ -0.03
CLRN1P58418 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.87□□□□□ -0.03
CLRN1P58418 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.87□□□□□ -0.03
CLRN1P58418 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
CLRN1P58418 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
CLRN1P58418 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN1P58418 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN1P58418 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.87□□□□□ -0.03
CLRN1P58418 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
CLRN1P58418 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
CLRN1P58418 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
CLRN1P58418 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.86□□□□□ -0.03
CLRN1P58418 ALOX12P2-203ENST00000570921 1945 ntBASIC14.86□□□□□ -0.03
CLRN1P58418 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 AC126755.1-201ENST00000525846 6405 ntBASIC14.86□□□□□ -0.03
CLRN1P58418 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN1P58418 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.86□□□□□ -0.03
CLRN1P58418 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.86□□□□□ -0.03
CLRN1P58418 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN1P58418 AC079776.4-201ENST00000511039 504 ntBASIC14.86□□□□□ -0.03
CLRN1P58418 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
CLRN1P58418 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CLRN1P58418 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC14.86□□□□□ -0.03
CLRN1P58418 OR7E47P-204ENST00000575924 449 ntBASIC14.86□□□□□ -0.03
CLRN1P58418 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.86□□□□□ -0.03
CLRN1P58418 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN1P58418 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN1P58418 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 HLA-A-201ENST00000376802 1334 ntBASIC14.86□□□□□ -0.03
CLRN1P58418 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CLRN1P58418 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
CLRN1P58418 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.86□□□□□ -0.03
CLRN1P58418 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CLRN1P58418 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN1P58418 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms