Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC21.68■■□□□ 1.06
RIPK4P57078 VMO1-203ENST00000416307 712 ntTSL 2 BASIC21.68■■□□□ 1.06
RIPK4P57078 TSEN15P1-201ENST00000423257 515 ntBASIC21.68■■□□□ 1.06
RIPK4P57078 KRT18P32-201ENST00000424695 1287 ntBASIC21.68■■□□□ 1.06
RIPK4P57078 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC21.68■■□□□ 1.06
RIPK4P57078 METTL21AP1-201ENST00000438852 635 ntBASIC21.68■■□□□ 1.06
RIPK4P57078 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC21.68■■□□□ 1.06
RIPK4P57078 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
RIPK4P57078 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC21.68■■□□□ 1.06
RIPK4P57078 AC109322.1-201ENST00000524499 1264 ntBASIC21.68■■□□□ 1.06
RIPK4P57078 TSFM-210ENST00000550559 897 ntTSL 5 BASIC21.68■■□□□ 1.06
RIPK4P57078 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC21.68■■□□□ 1.06
RIPK4P57078 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC21.68■■□□□ 1.06
RIPK4P57078 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC21.68■■□□□ 1.06
RIPK4P57078 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.68■■□□□ 1.06
RIPK4P57078 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
RIPK4P57078 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
RIPK4P57078 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC21.68■■□□□ 1.06
RIPK4P57078 FOXO1B-201ENST00000504678 1527 ntBASIC21.68■■□□□ 1.06
RIPK4P57078 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 OS9-205ENST00000413095 1660 ntTSL 2 BASIC21.68■■□□□ 1.06
RIPK4P57078 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC21.68■■□□□ 1.06
RIPK4P57078 PCGF3-213ENST00000620529 1899 ntBASIC21.68■■□□□ 1.06
RIPK4P57078 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC21.68■■□□□ 1.06
RIPK4P57078 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC21.68■■□□□ 1.06
RIPK4P57078 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
RIPK4P57078 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
RIPK4P57078 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC21.67■■□□□ 1.06
RIPK4P57078 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC21.67■■□□□ 1.06
RIPK4P57078 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC21.67■■□□□ 1.06
RIPK4P57078 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
RIPK4P57078 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
RIPK4P57078 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC21.67■■□□□ 1.06
RIPK4P57078 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.67■■□□□ 1.06
RIPK4P57078 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.67■■□□□ 1.06
RIPK4P57078 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
RIPK4P57078 AC142381.1-201ENST00000426099 345 ntBASIC21.67■■□□□ 1.06
RIPK4P57078 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC21.67■■□□□ 1.06
RIPK4P57078 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.67■■□□□ 1.06
RIPK4P57078 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC21.67■■□□□ 1.06
RIPK4P57078 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC21.67■■□□□ 1.06
RIPK4P57078 HLA-J-203ENST00000494367 1087 ntBASIC21.67■■□□□ 1.06
RIPK4P57078 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.67■■□□□ 1.06
RIPK4P57078 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC21.67■■□□□ 1.06
RIPK4P57078 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC21.67■■□□□ 1.06
RIPK4P57078 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC21.67■■□□□ 1.06
RIPK4P57078 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
RIPK4P57078 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RIPK4P57078 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC21.67■■□□□ 1.06
RIPK4P57078 ALOX12P2-203ENST00000570921 1945 ntBASIC21.67■■□□□ 1.06
RIPK4P57078 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC21.66■■□□□ 1.06
RIPK4P57078 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC21.66■■□□□ 1.06
RIPK4P57078 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC21.66■■□□□ 1.06
RIPK4P57078 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RIPK4P57078 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC21.66■■□□□ 1.06
RIPK4P57078 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RIPK4P57078 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
RIPK4P57078 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
RIPK4P57078 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC21.66■■□□□ 1.06
RIPK4P57078 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RIPK4P57078 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RIPK4P57078 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.66■■□□□ 1.06
RIPK4P57078 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RIPK4P57078 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC21.66■■□□□ 1.06
RIPK4P57078 AC105233.2-201ENST00000523697 349 ntBASIC21.66■■□□□ 1.06
RIPK4P57078 AF228730.5-201ENST00000530288 346 ntBASIC21.66■■□□□ 1.06
RIPK4P57078 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC21.66■■□□□ 1.06
RIPK4P57078 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC21.66■■□□□ 1.06
RIPK4P57078 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC21.66■■□□□ 1.06
RIPK4P57078 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC21.66■■□□□ 1.06
RIPK4P57078 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RIPK4P57078 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms