Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.36■□□□□ 0.21
PKNOX1P55347 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKNOX1P55347 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.35■□□□□ 0.21
PKNOX1P55347 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.35■□□□□ 0.21
PKNOX1P55347 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.35■□□□□ 0.21
PKNOX1P55347 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.35■□□□□ 0.21
PKNOX1P55347 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.35■□□□□ 0.21
PKNOX1P55347 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.35■□□□□ 0.21
PKNOX1P55347 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.35■□□□□ 0.21
PKNOX1P55347 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PKNOX1P55347 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.35■□□□□ 0.21
PKNOX1P55347 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.35■□□□□ 0.21
PKNOX1P55347 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PKNOX1P55347 AL445228.2-201ENST00000605589 952 ntBASIC16.35■□□□□ 0.21
PKNOX1P55347 AL121772.3-201ENST00000610840 674 ntBASIC16.35■□□□□ 0.21
PKNOX1P55347 AL355877.3-201ENST00000622820 899 ntBASIC16.35■□□□□ 0.21
PKNOX1P55347 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.35■□□□□ 0.21
PKNOX1P55347 AF228730.7-201ENST00000641842 219 ntBASIC16.35■□□□□ 0.21
PKNOX1P55347 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.35■□□□□ 0.21
PKNOX1P55347 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.35■□□□□ 0.21
PKNOX1P55347 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.35■□□□□ 0.21
PKNOX1P55347 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
PKNOX1P55347 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PKNOX1P55347 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKNOX1P55347 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 MTHFR-217ENST00000641820 1569 ntBASIC16.34■□□□□ 0.21
PKNOX1P55347 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.34■□□□□ 0.21
PKNOX1P55347 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.34■□□□□ 0.21
PKNOX1P55347 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
PKNOX1P55347 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PKNOX1P55347 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.34■□□□□ 0.21
PKNOX1P55347 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.34■□□□□ 0.21
PKNOX1P55347 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
PKNOX1P55347 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.34■□□□□ 0.21
PKNOX1P55347 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.34■□□□□ 0.21
PKNOX1P55347 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PKNOX1P55347 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.34■□□□□ 0.21
PKNOX1P55347 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.34■□□□□ 0.21
PKNOX1P55347 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
PKNOX1P55347 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.34■□□□□ 0.21
PKNOX1P55347 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.34■□□□□ 0.21
PKNOX1P55347 MIR3652-201ENST00000579335 131 ntBASIC16.34■□□□□ 0.21
PKNOX1P55347 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
PKNOX1P55347 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.34■□□□□ 0.21
PKNOX1P55347 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PKNOX1P55347 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PKNOX1P55347 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PKNOX1P55347 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
PKNOX1P55347 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
PKNOX1P55347 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PKNOX1P55347 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.33■□□□□ 0.21
PKNOX1P55347 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
PKNOX1P55347 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PKNOX1P55347 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.33■□□□□ 0.21
PKNOX1P55347 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.33■□□□□ 0.21
PKNOX1P55347 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PKNOX1P55347 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
PKNOX1P55347 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.33■□□□□ 0.21
PKNOX1P55347 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PKNOX1P55347 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms