Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH6P55285 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.31■□□□□ 0.36
CDH6P55285 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
CDH6P55285 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.31■□□□□ 0.36
CDH6P55285 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.31■□□□□ 0.36
CDH6P55285 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDH6P55285 GPAA1P2-202ENST00000606848 1787 ntBASIC17.3■□□□□ 0.36
CDH6P55285 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.3■□□□□ 0.36
CDH6P55285 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CDH6P55285 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.3■□□□□ 0.36
CDH6P55285 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CDH6P55285 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.3■□□□□ 0.36
CDH6P55285 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.3■□□□□ 0.36
CDH6P55285 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.3■□□□□ 0.36
CDH6P55285 AL513480.1-201ENST00000451731 511 ntBASIC17.3■□□□□ 0.36
CDH6P55285 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.3■□□□□ 0.36
CDH6P55285 AC079776.4-201ENST00000511039 504 ntBASIC17.3■□□□□ 0.36
CDH6P55285 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.3■□□□□ 0.36
CDH6P55285 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.3■□□□□ 0.36
CDH6P55285 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.3■□□□□ 0.36
CDH6P55285 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.3■□□□□ 0.36
CDH6P55285 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CDH6P55285 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.3■□□□□ 0.36
CDH6P55285 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH6P55285 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.3■□□□□ 0.36
CDH6P55285 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDH6P55285 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDH6P55285 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDH6P55285 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.29■□□□□ 0.36
CDH6P55285 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CDH6P55285 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH6P55285 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.29■□□□□ 0.36
CDH6P55285 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH6P55285 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH6P55285 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 IGLL3P-201ENST00000412472 434 ntBASIC17.29■□□□□ 0.36
CDH6P55285 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH6P55285 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH6P55285 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.29■□□□□ 0.36
CDH6P55285 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.29■□□□□ 0.36
CDH6P55285 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH6P55285 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDH6P55285 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH6P55285 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CDH6P55285 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CDH6P55285 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CDH6P55285 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH6P55285 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH6P55285 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.28■□□□□ 0.36
CDH6P55285 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
CDH6P55285 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH6P55285 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CDH6P55285 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH6P55285 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.28■□□□□ 0.36
CDH6P55285 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH6P55285 HCG4B-203ENST00000450128 991 ntBASIC17.28■□□□□ 0.36
CDH6P55285 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.28■□□□□ 0.36
CDH6P55285 Z83851.2-201ENST00000609564 659 ntBASIC17.28■□□□□ 0.36
CDH6P55285 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms