Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
BRCA1P38398 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 TARDBPP1-201ENST00000442013 1203 ntBASIC19.78■□□□□ 0.76
BRCA1P38398 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 SCARNA20.5-201ENST00000516991 142 ntBASIC19.78■□□□□ 0.76
BRCA1P38398 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC19.78■□□□□ 0.76
BRCA1P38398 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.78■□□□□ 0.76
BRCA1P38398 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.78■□□□□ 0.76
BRCA1P38398 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
BRCA1P38398 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 KRT8P19-201ENST00000551916 1455 ntBASIC19.78■□□□□ 0.76
BRCA1P38398 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC19.78■□□□□ 0.76
BRCA1P38398 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRCA1P38398 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.78■□□□□ 0.76
BRCA1P38398 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 AC134915.1-201ENST00000426461 574 ntBASIC19.77■□□□□ 0.76
BRCA1P38398 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.77■□□□□ 0.76
BRCA1P38398 RPS2P36-201ENST00000456516 831 ntBASIC19.77■□□□□ 0.76
BRCA1P38398 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.77■□□□□ 0.76
BRCA1P38398 AC022137.2-201ENST00000503482 481 ntBASIC19.77■□□□□ 0.76
BRCA1P38398 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC19.77■□□□□ 0.76
BRCA1P38398 AC079328.1-201ENST00000560358 952 ntBASIC19.77■□□□□ 0.76
BRCA1P38398 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.77■□□□□ 0.76
BRCA1P38398 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 BX323043.1-201ENST00000641006 1765 ntBASIC19.77■□□□□ 0.76
BRCA1P38398 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.77■□□□□ 0.76
BRCA1P38398 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
BRCA1P38398 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC19.77■□□□□ 0.76
BRCA1P38398 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.77■□□□□ 0.76
BRCA1P38398 EIF4HP1-201ENST00000453115 687 ntBASIC19.77■□□□□ 0.76
BRCA1P38398 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
BRCA1P38398 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRCA1P38398 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.77■□□□□ 0.76
BRCA1P38398 CLUHP6-201ENST00000580789 941 ntBASIC19.77■□□□□ 0.76
BRCA1P38398 LINC02012-201ENST00000608206 1725 ntBASIC19.77■□□□□ 0.76
BRCA1P38398 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.77■□□□□ 0.76
BRCA1P38398 AC008687.7-202ENST00000637404 953 ntBASIC19.77■□□□□ 0.76
BRCA1P38398 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
BRCA1P38398 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.76■□□□□ 0.75
BRCA1P38398 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.76■□□□□ 0.75
BRCA1P38398 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
BRCA1P38398 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
BRCA1P38398 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
BRCA1P38398 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
BRCA1P38398 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRCA1P38398 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
BRCA1P38398 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
BRCA1P38398 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.75■□□□□ 0.75
BRCA1P38398 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
BRCA1P38398 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC19.75■□□□□ 0.75
BRCA1P38398 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.75■□□□□ 0.75
BRCA1P38398 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
BRCA1P38398 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
BRCA1P38398 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.75■□□□□ 0.75
BRCA1P38398 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.75■□□□□ 0.75
BRCA1P38398 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms