Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.49■□□□□ 0.39
BDNFP23560 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.49■□□□□ 0.39
BDNFP23560 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
BDNFP23560 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.49■□□□□ 0.39
BDNFP23560 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 AC106886.4-201ENST00000623557 2502 ntBASIC17.49■□□□□ 0.39
BDNFP23560 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 AC009053.2-201ENST00000563701 2365 ntBASIC17.48■□□□□ 0.39
BDNFP23560 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
BDNFP23560 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
BDNFP23560 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.48■□□□□ 0.39
BDNFP23560 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.48■□□□□ 0.39
BDNFP23560 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
BDNFP23560 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.48■□□□□ 0.39
BDNFP23560 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.48■□□□□ 0.39
BDNFP23560 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.48■□□□□ 0.39
BDNFP23560 PRYP6-201ENST00000514804 343 ntBASIC17.48■□□□□ 0.39
BDNFP23560 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.48■□□□□ 0.39
BDNFP23560 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.48■□□□□ 0.39
BDNFP23560 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.48■□□□□ 0.39
BDNFP23560 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.48■□□□□ 0.39
BDNFP23560 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.48■□□□□ 0.39
BDNFP23560 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
BDNFP23560 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.48■□□□□ 0.39
BDNFP23560 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.48■□□□□ 0.39
BDNFP23560 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.48■□□□□ 0.39
BDNFP23560 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.48■□□□□ 0.39
BDNFP23560 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
BDNFP23560 AC073439.1-201ENST00000624121 1774 ntBASIC17.48■□□□□ 0.39
BDNFP23560 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.47■□□□□ 0.39
BDNFP23560 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.47■□□□□ 0.39
BDNFP23560 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.47■□□□□ 0.39
BDNFP23560 CYMP-203ENST00000474680 1263 ntBASIC17.47■□□□□ 0.39
BDNFP23560 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.47■□□□□ 0.39
BDNFP23560 AC105233.2-201ENST00000523697 349 ntBASIC17.47■□□□□ 0.39
BDNFP23560 AF228730.5-201ENST00000530288 346 ntBASIC17.47■□□□□ 0.39
BDNFP23560 AL355385.1-201ENST00000606123 409 ntBASIC17.47■□□□□ 0.39
BDNFP23560 Z92544.3-201ENST00000624747 417 ntBASIC17.47■□□□□ 0.39
BDNFP23560 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 GPAA1P2-202ENST00000606848 1787 ntBASIC17.47■□□□□ 0.39
BDNFP23560 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
BDNFP23560 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.47■□□□□ 0.39
BDNFP23560 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
BDNFP23560 GGT4P-201ENST00000623672 1708 ntBASIC17.47■□□□□ 0.39
BDNFP23560 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
BDNFP23560 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.46■□□□□ 0.39
BDNFP23560 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.46■□□□□ 0.39
BDNFP23560 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
BDNFP23560 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
BDNFP23560 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.46■□□□□ 0.39
BDNFP23560 AC142381.1-201ENST00000426099 345 ntBASIC17.46■□□□□ 0.39
BDNFP23560 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.46■□□□□ 0.39
BDNFP23560 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.46■□□□□ 0.39
BDNFP23560 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms