Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 IGHV3-52-201ENST00000519770 353 ntBASIC12.56□□□□□ -0.4
HLA-DQA1P01909 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 AC126335.2-201ENST00000623362 4637 ntBASIC12.56□□□□□ -0.4
HLA-DQA1P01909 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 AC026748.1-201ENST00000624349 3251 ntBASIC12.56□□□□□ -0.4
HLA-DQA1P01909 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 AC067750.1-201ENST00000608826 6545 ntBASIC12.56□□□□□ -0.4
HLA-DQA1P01909 AC006486.2-201ENST00000624246 2199 ntBASIC12.56□□□□□ -0.4
HLA-DQA1P01909 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 ENSA-206ENST00000361631 725 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 C2orf69P3-201ENST00000565542 1120 ntBASIC12.55□□□□□ -0.4
HLA-DQA1P01909 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DQA1P01909 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 AC112698.1-201ENST00000510299 916 ntBASIC12.54□□□□□ -0.4
HLA-DQA1P01909 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 AP005242.2-201ENST00000580065 1175 ntBASIC12.54□□□□□ -0.4
HLA-DQA1P01909 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DQA1P01909 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms