Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.14■□□□□ 0.17
LDLRP01130 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.14■□□□□ 0.17
LDLRP01130 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.14■□□□□ 0.17
LDLRP01130 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.14■□□□□ 0.17
LDLRP01130 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
LDLRP01130 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.14■□□□□ 0.17
LDLRP01130 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.14■□□□□ 0.17
LDLRP01130 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LDLRP01130 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.14■□□□□ 0.17
LDLRP01130 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
LDLRP01130 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
LDLRP01130 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.14■□□□□ 0.17
LDLRP01130 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
LDLRP01130 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.13■□□□□ 0.17
LDLRP01130 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
LDLRP01130 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
LDLRP01130 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.13■□□□□ 0.17
LDLRP01130 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.13■□□□□ 0.17
LDLRP01130 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LDLRP01130 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.13■□□□□ 0.17
LDLRP01130 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LDLRP01130 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 MYCLP1-201ENST00000372451 1075 ntBASIC16.13■□□□□ 0.17
LDLRP01130 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
LDLRP01130 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.13■□□□□ 0.17
LDLRP01130 AC004832.2-201ENST00000426397 482 ntBASIC16.13■□□□□ 0.17
LDLRP01130 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.13■□□□□ 0.17
LDLRP01130 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.13■□□□□ 0.17
LDLRP01130 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.13■□□□□ 0.17
LDLRP01130 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.13■□□□□ 0.17
LDLRP01130 AC005336.2-201ENST00000593183 939 ntBASIC16.13■□□□□ 0.17
LDLRP01130 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.13■□□□□ 0.17
LDLRP01130 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LDLRP01130 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
LDLRP01130 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LDLRP01130 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LDLRP01130 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LDLRP01130 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDLRP01130 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.13■□□□□ 0.17
LDLRP01130 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
LDLRP01130 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.13■□□□□ 0.17
LDLRP01130 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
LDLRP01130 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LDLRP01130 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LDLRP01130 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.12■□□□□ 0.17
LDLRP01130 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LDLRP01130 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
LDLRP01130 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
LDLRP01130 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.12■□□□□ 0.17
LDLRP01130 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.12■□□□□ 0.17
LDLRP01130 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LDLRP01130 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.12■□□□□ 0.17
LDLRP01130 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.12■□□□□ 0.17
LDLRP01130 OR7E14P-202ENST00000530490 1290 ntBASIC16.12■□□□□ 0.17
LDLRP01130 SART3-203ENST00000546611 1184 ntBASIC16.12■□□□□ 0.17
LDLRP01130 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.12■□□□□ 0.17
LDLRP01130 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.12■□□□□ 0.17
LDLRP01130 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.12■□□□□ 0.17
LDLRP01130 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.12■□□□□ 0.17
LDLRP01130 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.12■□□□□ 0.17
LDLRP01130 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
LDLRP01130 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
LDLRP01130 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
LDLRP01130 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
LDLRP01130 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
LDLRP01130 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.12■□□□□ 0.17
LDLRP01130 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms