Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 LMCD1-201ENST00000157600 8405 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 AC104640.1-201ENST00000562617 2109 ntBASIC13.43□□□□□ -0.26
HMGB3O15347 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 UNC93B2-201ENST00000285383 730 ntBASIC13.43□□□□□ -0.26
HMGB3O15347 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 INGX-201ENST00000359239 846 ntBASIC13.43□□□□□ -0.26
HMGB3O15347 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 EMC9-206ENST00000560403 872 ntTSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 AP003071.4-201ENST00000562276 1284 ntBASIC13.43□□□□□ -0.26
HMGB3O15347 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC13.43□□□□□ -0.26
HMGB3O15347 AP000525.1-201ENST00000608286 694 ntBASIC13.43□□□□□ -0.26
HMGB3O15347 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
HMGB3O15347 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
HMGB3O15347 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HMGB3O15347 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC13.43□□□□□ -0.26
HMGB3O15347 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
HMGB3O15347 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
HMGB3O15347 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.42□□□□□ -0.26
HMGB3O15347 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC13.42□□□□□ -0.26
HMGB3O15347 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
HMGB3O15347 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.42□□□□□ -0.26
HMGB3O15347 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HMGB3O15347 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 FAM225A-202ENST00000453010 5625 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
HMGB3O15347 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 PEX7-202ENST00000367756 680 ntTSL 3 BASIC13.42□□□□□ -0.26
HMGB3O15347 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC13.42□□□□□ -0.26
HMGB3O15347 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC13.42□□□□□ -0.26
HMGB3O15347 RBM17P1-201ENST00000453646 1190 ntBASIC13.42□□□□□ -0.26
HMGB3O15347 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC13.42□□□□□ -0.26
HMGB3O15347 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC13.42□□□□□ -0.26
HMGB3O15347 IRX5-204ENST00000560154 879 ntTSL 5 BASIC13.42□□□□□ -0.26
HMGB3O15347 MIR4651-201ENST00000582622 73 ntBASIC13.42□□□□□ -0.26
HMGB3O15347 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 AC010653.2-201ENST00000623505 997 ntBASIC13.42□□□□□ -0.26
HMGB3O15347 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HMGB3O15347 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HMGB3O15347 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HMGB3O15347 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms