Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC148477.5-201ENST00000625164 1645 ntBASIC14.21□□□□□ -0.13
SDCBPO00560 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
SDCBPO00560 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SDCBPO00560 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SDCBPO00560 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.21□□□□□ -0.14
SDCBPO00560 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.21□□□□□ -0.14
SDCBPO00560 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.14
SDCBPO00560 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
SDCBPO00560 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC14.2□□□□□ -0.14
SDCBPO00560 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 S100A2-206ENST00000497140 697 ntTSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 COPE-211ENST00000600932 1144 ntTSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 MTHFR-217ENST00000641820 1569 ntBASIC14.2□□□□□ -0.14
SDCBPO00560 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SDCBPO00560 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 AC068587.6-202ENST00000641839 5619 ntBASIC14.2□□□□□ -0.14
SDCBPO00560 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.2□□□□□ -0.14
SDCBPO00560 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.2□□□□□ -0.14
SDCBPO00560 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDCBPO00560 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SDCBPO00560 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SDCBPO00560 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.19□□□□□ -0.14
SDCBPO00560 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.19□□□□□ -0.14
SDCBPO00560 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.19□□□□□ -0.14
SDCBPO00560 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 AC006538.1-201ENST00000567905 1585 ntBASIC14.19□□□□□ -0.14
SDCBPO00560 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SDCBPO00560 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC14.19□□□□□ -0.14
SDCBPO00560 AC132008.2-207ENST00000454517 770 ntBASIC14.19□□□□□ -0.14
SDCBPO00560 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC14.19□□□□□ -0.14
SDCBPO00560 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC14.19□□□□□ -0.14
SDCBPO00560 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDCBPO00560 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SDCBPO00560 AC097637.2-201ENST00000624096 1997 ntBASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms