Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA2Q9Y261 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ELK2BP-201ENST00000415014 1224 ntBASIC13.49□□□□□ -0.25
FOXA2Q9Y261 AC026396.1-201ENST00000419388 421 ntBASIC13.49□□□□□ -0.25
FOXA2Q9Y261 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 HNRNPDP1-201ENST00000439535 754 ntBASIC13.49□□□□□ -0.25
FOXA2Q9Y261 AC136632.2-201ENST00000512891 861 ntBASIC13.49□□□□□ -0.25
FOXA2Q9Y261 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 PGM5P2-202ENST00000637225 1043 ntBASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.49□□□□□ -0.25
FOXA2Q9Y261 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 FLJ16779-201ENST00000612722 7638 ntBASIC13.48□□□□□ -0.25
FOXA2Q9Y261 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 AC005593.1-201ENST00000624894 515 ntBASIC13.48□□□□□ -0.25
FOXA2Q9Y261 AL805961.1-202ENST00000641562 540 ntBASIC13.48□□□□□ -0.25
FOXA2Q9Y261 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA2Q9Y261 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms