Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 PDPK2P-202ENST00000562415 1191 ntBASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 SNHG9-202ENST00000564014 471 ntBASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 AC239800.4-201ENST00000603712 296 ntBASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 AC012183.1-201ENST00000625197 499 ntBASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 AL645728.2-201ENST00000641974 660 ntBASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 AC092919.2-201ENST00000623631 1645 ntBASIC16.12■□□□□ 0.17
CUEDC1Q9NWM3 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CUEDC1Q9NWM3 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 PCDHA14-201ENST00000506751 2298 ntBASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 AC006538.1-201ENST00000567905 1585 ntBASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 RNU1-129P-201ENST00000384064 167 ntBASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 U1.21-201ENST00000580816 167 ntBASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 AL139011.1-202ENST00000642063 584 ntBASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 AL512652.2-201ENST00000625156 1716 ntBASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 KRT8P39-201ENST00000396270 1433 ntBASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.1■□□□□ 0.17
CUEDC1Q9NWM3 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms