Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 TTTY23B-201ENST00000442790 549 ntBASIC18.05■□□□□ 0.48
HIPK3Q9H422 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HIPK3Q9H422 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.05■□□□□ 0.48
HIPK3Q9H422 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HIPK3Q9H422 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HIPK3Q9H422 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 TUBB8P12-201ENST00000308911 1335 ntBASIC18.03■□□□□ 0.48
HIPK3Q9H422 TUBB7P-202ENST00000428444 1305 ntBASIC18.03■□□□□ 0.48
HIPK3Q9H422 TUBB8P7-204ENST00000567960 1332 ntBASIC18.03■□□□□ 0.48
HIPK3Q9H422 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 MYCLP2-201ENST00000449268 967 ntBASIC18.03■□□□□ 0.48
HIPK3Q9H422 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 TPRX2P-201ENST00000535362 881 ntBASIC18.03■□□□□ 0.48
HIPK3Q9H422 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 SRD5A3P1-201ENST00000603021 949 ntBASIC18.03■□□□□ 0.48
HIPK3Q9H422 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms