Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.03■□□□□ 0.64
USP28Q96RU2 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.03■□□□□ 0.64
USP28Q96RU2 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
USP28Q96RU2 HCG4-201ENST00000418983 998 ntBASIC19.03■□□□□ 0.64
USP28Q96RU2 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.03■□□□□ 0.64
USP28Q96RU2 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.03■□□□□ 0.64
USP28Q96RU2 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.03■□□□□ 0.64
USP28Q96RU2 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.03■□□□□ 0.64
USP28Q96RU2 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.03■□□□□ 0.64
USP28Q96RU2 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.03■□□□□ 0.64
USP28Q96RU2 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.03■□□□□ 0.64
USP28Q96RU2 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.03■□□□□ 0.64
USP28Q96RU2 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.03■□□□□ 0.64
USP28Q96RU2 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.03■□□□□ 0.64
USP28Q96RU2 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.03■□□□□ 0.64
USP28Q96RU2 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.03■□□□□ 0.64
USP28Q96RU2 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.03■□□□□ 0.64
USP28Q96RU2 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 LINC01144-201ENST00000626198 1710 ntBASIC19.03■□□□□ 0.64
USP28Q96RU2 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.03■□□□□ 0.64
USP28Q96RU2 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.02■□□□□ 0.64
USP28Q96RU2 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.02■□□□□ 0.64
USP28Q96RU2 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.02■□□□□ 0.64
USP28Q96RU2 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.02■□□□□ 0.64
USP28Q96RU2 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.02■□□□□ 0.64
USP28Q96RU2 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.02■□□□□ 0.64
USP28Q96RU2 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.02■□□□□ 0.64
USP28Q96RU2 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
USP28Q96RU2 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 AC079781.3-201ENST00000449110 356 ntBASIC19.02■□□□□ 0.64
USP28Q96RU2 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.02■□□□□ 0.64
USP28Q96RU2 AC108073.2-201ENST00000464002 357 ntBASIC19.02■□□□□ 0.64
USP28Q96RU2 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.02■□□□□ 0.64
USP28Q96RU2 MIR1199-201ENST00000621445 119 ntBASIC19.02■□□□□ 0.64
USP28Q96RU2 AL691432.3-201ENST00000621860 400 ntBASIC19.02■□□□□ 0.64
USP28Q96RU2 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.02■□□□□ 0.64
USP28Q96RU2 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
USP28Q96RU2 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP28Q96RU2 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP28Q96RU2 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP28Q96RU2 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
USP28Q96RU2 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP28Q96RU2 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.01■□□□□ 0.63
USP28Q96RU2 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.01■□□□□ 0.63
USP28Q96RU2 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC19.01■□□□□ 0.63
USP28Q96RU2 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
USP28Q96RU2 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.01■□□□□ 0.63
USP28Q96RU2 KRT18P67-201ENST00000432816 1264 ntBASIC19.01■□□□□ 0.63
USP28Q96RU2 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.01■□□□□ 0.63
USP28Q96RU2 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
USP28Q96RU2 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.01■□□□□ 0.63
USP28Q96RU2 ACTL9-202ENST00000612068 1252 ntBASIC19.01■□□□□ 0.63
USP28Q96RU2 AC004790.2-201ENST00000623588 572 ntBASIC19.01■□□□□ 0.63
USP28Q96RU2 AP001350.2-201ENST00000625104 1094 ntBASIC19.01■□□□□ 0.63
USP28Q96RU2 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
USP28Q96RU2 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
USP28Q96RU2 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
USP28Q96RU2 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.01■□□□□ 0.63
USP28Q96RU2 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP28Q96RU2 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19■□□□□ 0.63
USP28Q96RU2 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19■□□□□ 0.63
USP28Q96RU2 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
USP28Q96RU2 SUPT20HL2-201ENST00000486479 2409 ntBASIC19■□□□□ 0.63
USP28Q96RU2 AC105917.1-201ENST00000506637 2539 ntBASIC19■□□□□ 0.63
USP28Q96RU2 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19■□□□□ 0.63
USP28Q96RU2 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19■□□□□ 0.63
USP28Q96RU2 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms