Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CMTM3Q96MX0 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
CMTM3Q96MX0 AC020658.6-201ENST00000623564 1870 ntBASIC14.35□□□□□ -0.11
CMTM3Q96MX0 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 COPE-203ENST00000351079 907 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 CD70-202ENST00000423145 881 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 DET1-205ENST00000558413 583 ntTSL 4 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 AC010654.1-201ENST00000615722 808 ntBASIC14.35□□□□□ -0.11
CMTM3Q96MX0 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CMTM3Q96MX0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 SSR4P1-203ENST00000599569 2260 ntBASIC14.34□□□□□ -0.11
CMTM3Q96MX0 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 SNORA78-201ENST00000459373 127 ntBASIC14.34□□□□□ -0.11
CMTM3Q96MX0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 RNF126P1-202ENST00000569893 925 ntBASIC14.34□□□□□ -0.11
CMTM3Q96MX0 P4HB-223ENST00000576390 439 ntTSL 4 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.34□□□□□ -0.11
CMTM3Q96MX0 AL590326.2-201ENST00000625139 305 ntBASIC14.34□□□□□ -0.11
CMTM3Q96MX0 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CMTM3Q96MX0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms