Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 AC006449.6-201ENST00000612330 2296 ntBASIC18■□□□□ 0.47
CCDC42Q96M95 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CCDC42Q96M95 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18■□□□□ 0.47
CCDC42Q96M95 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 FICD-205ENST00000552758 603 ntTSL 2 BASIC18■□□□□ 0.47
CCDC42Q96M95 MPDU1-223ENST00000582151 728 ntBASIC18■□□□□ 0.47
CCDC42Q96M95 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CCDC42Q96M95 NPAP1P7-201ENST00000613027 823 ntBASIC18■□□□□ 0.47
CCDC42Q96M95 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18■□□□□ 0.47
CCDC42Q96M95 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCDC42Q96M95 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18■□□□□ 0.47
CCDC42Q96M95 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 LINC00554-201ENST00000564841 3011 ntBASIC18■□□□□ 0.47
CCDC42Q96M95 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18■□□□□ 0.47
CCDC42Q96M95 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18■□□□□ 0.47
CCDC42Q96M95 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18■□□□□ 0.47
CCDC42Q96M95 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC42Q96M95 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 AP000550.4-202ENST00000639755 178 ntBASIC17.99■□□□□ 0.47
CCDC42Q96M95 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 AL603832.2-201ENST00000566195 2125 ntBASIC17.99■□□□□ 0.47
CCDC42Q96M95 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC42Q96M95 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC42Q96M95 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 PAWRP1-201ENST00000451083 565 ntBASIC17.98■□□□□ 0.47
CCDC42Q96M95 MIR4492-201ENST00000581627 80 ntBASIC17.98■□□□□ 0.47
CCDC42Q96M95 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 NKAPP1-205ENST00000585790 367 ntBASIC17.98■□□□□ 0.47
CCDC42Q96M95 AL139424.1-201ENST00000607572 797 ntBASIC17.98■□□□□ 0.47
CCDC42Q96M95 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 AL589182.2-201ENST00000619332 1049 ntBASIC17.98■□□□□ 0.47
CCDC42Q96M95 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC42Q96M95 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC42Q96M95 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms