Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.85■□□□□ 0.77
CHMP4CQ96CF2 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 DNAJB3-202ENST00000449667 1266 ntBASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 AC004967.1-201ENST00000453589 447 ntBASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 AC074386.1-202ENST00000463561 864 ntBASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 AL603756.1-201ENST00000606511 2163 ntBASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 AL645728.1-201ENST00000366221 2101 ntBASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4CQ96CF2 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 PCDHA14-201ENST00000506751 2298 ntBASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 AC006538.1-201ENST00000567905 1585 ntBASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 AC092183.1-201ENST00000469884 875 ntBASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 AC007064.4-201ENST00000637740 555 ntBASIC19.83■□□□□ 0.77
CHMP4CQ96CF2 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4CQ96CF2 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4CQ96CF2 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.83■□□□□ 0.76
CHMP4CQ96CF2 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
CHMP4CQ96CF2 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.83■□□□□ 0.76
CHMP4CQ96CF2 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.83■□□□□ 0.76
CHMP4CQ96CF2 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.83■□□□□ 0.76
CHMP4CQ96CF2 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP4CQ96CF2 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms