Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HMGB4Q8WW32 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 SPTLC1P1-201ENST00000447199 261 ntBASIC16.62■□□□□ 0.25
HMGB4Q8WW32 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB4Q8WW32 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 AC092053.1-201ENST00000605787 1936 ntBASIC16.61■□□□□ 0.25
HMGB4Q8WW32 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 FAM220BP-201ENST00000377689 816 ntBASIC16.61■□□□□ 0.25
HMGB4Q8WW32 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 TEX28P1-201ENST00000613479 1221 ntBASIC16.61■□□□□ 0.25
HMGB4Q8WW32 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 TEX28P2-201ENST00000617764 1221 ntBASIC16.61■□□□□ 0.25
HMGB4Q8WW32 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB4Q8WW32 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms