Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.57■□□□□ 0.08
CDH12P55289 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.57■□□□□ 0.08
CDH12P55289 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CDH12P55289 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CDH12P55289 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CDH12P55289 AP002414.1-201ENST00000391405 1147 ntBASIC15.57■□□□□ 0.08
CDH12P55289 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.57■□□□□ 0.08
CDH12P55289 UPK3BP1-201ENST00000428678 509 ntBASIC15.57■□□□□ 0.08
CDH12P55289 PRYP5-201ENST00000451909 266 ntBASIC15.57■□□□□ 0.08
CDH12P55289 BX005266.1-201ENST00000473402 457 ntBASIC15.57■□□□□ 0.08
CDH12P55289 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.57■□□□□ 0.08
CDH12P55289 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.57■□□□□ 0.08
CDH12P55289 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.57■□□□□ 0.08
CDH12P55289 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.57■□□□□ 0.08
CDH12P55289 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 KRT8P49-201ENST00000604166 1432 ntBASIC15.57■□□□□ 0.08
CDH12P55289 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.57■□□□□ 0.08
CDH12P55289 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH12P55289 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.56■□□□□ 0.08
CDH12P55289 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CDH12P55289 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.56■□□□□ 0.08
CDH12P55289 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 AC106795.1-205ENST00000512851 1056 ntBASIC15.56■□□□□ 0.08
CDH12P55289 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.56■□□□□ 0.08
CDH12P55289 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.56■□□□□ 0.08
CDH12P55289 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.56■□□□□ 0.08
CDH12P55289 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CDH12P55289 AL732292.2-201ENST00000609649 430 ntBASIC15.56■□□□□ 0.08
CDH12P55289 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.56■□□□□ 0.08
CDH12P55289 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.56■□□□□ 0.08
CDH12P55289 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.56■□□□□ 0.08
CDH12P55289 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.56■□□□□ 0.08
CDH12P55289 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
CDH12P55289 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CDH12P55289 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH12P55289 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.56■□□□□ 0.08
CDH12P55289 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CDH12P55289 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.55■□□□□ 0.08
CDH12P55289 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.55■□□□□ 0.08
CDH12P55289 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.55■□□□□ 0.08
CDH12P55289 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.55■□□□□ 0.08
CDH12P55289 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CDH12P55289 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 AL590787.1-201ENST00000568856 1315 ntBASIC15.55■□□□□ 0.08
CDH12P55289 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDH12P55289 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CDH12P55289 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms