Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.29■□□□□ 0.36
EPHB3P54753 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
EPHB3P54753 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.29■□□□□ 0.36
EPHB3P54753 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.29■□□□□ 0.36
EPHB3P54753 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.29■□□□□ 0.36
EPHB3P54753 HLA-V-204ENST00000476601 1289 ntBASIC17.29■□□□□ 0.36
EPHB3P54753 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.29■□□□□ 0.36
EPHB3P54753 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
EPHB3P54753 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.29■□□□□ 0.36
EPHB3P54753 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.29■□□□□ 0.36
EPHB3P54753 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.29■□□□□ 0.36
EPHB3P54753 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.29■□□□□ 0.36
EPHB3P54753 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.29■□□□□ 0.36
EPHB3P54753 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.29■□□□□ 0.36
EPHB3P54753 AL138828.2-201ENST00000615812 383 ntBASIC17.29■□□□□ 0.36
EPHB3P54753 SPDYE12P-201ENST00000618416 771 ntBASIC17.29■□□□□ 0.36
EPHB3P54753 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.29■□□□□ 0.36
EPHB3P54753 AC008761.3-201ENST00000624803 892 ntBASIC17.29■□□□□ 0.36
EPHB3P54753 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.29■□□□□ 0.36
EPHB3P54753 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
EPHB3P54753 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
EPHB3P54753 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
EPHB3P54753 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
EPHB3P54753 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
EPHB3P54753 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.29■□□□□ 0.36
EPHB3P54753 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
EPHB3P54753 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.29■□□□□ 0.36
EPHB3P54753 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
EPHB3P54753 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
EPHB3P54753 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
EPHB3P54753 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
EPHB3P54753 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.28■□□□□ 0.36
EPHB3P54753 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.28■□□□□ 0.36
EPHB3P54753 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
EPHB3P54753 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
EPHB3P54753 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 AL512652.2-201ENST00000625156 1716 ntBASIC17.28■□□□□ 0.36
EPHB3P54753 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
EPHB3P54753 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.28■□□□□ 0.36
EPHB3P54753 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.28■□□□□ 0.36
EPHB3P54753 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.28■□□□□ 0.36
EPHB3P54753 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.28■□□□□ 0.36
EPHB3P54753 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 MTND6P24-201ENST00000440466 518 ntBASIC17.28■□□□□ 0.36
EPHB3P54753 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.28■□□□□ 0.36
EPHB3P54753 AC004890.2-204ENST00000481968 304 ntBASIC17.28■□□□□ 0.36
EPHB3P54753 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.28■□□□□ 0.36
EPHB3P54753 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.28■□□□□ 0.36
EPHB3P54753 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.28■□□□□ 0.36
EPHB3P54753 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.28■□□□□ 0.36
EPHB3P54753 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.28■□□□□ 0.36
EPHB3P54753 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
EPHB3P54753 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.28■□□□□ 0.36
EPHB3P54753 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
EPHB3P54753 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
EPHB3P54753 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.27■□□□□ 0.36
EPHB3P54753 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.27■□□□□ 0.36
EPHB3P54753 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
EPHB3P54753 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.27■□□□□ 0.36
EPHB3P54753 MIR661-201ENST00000384842 89 ntBASIC17.27■□□□□ 0.36
EPHB3P54753 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.27■□□□□ 0.36
EPHB3P54753 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
EPHB3P54753 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
EPHB3P54753 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.27■□□□□ 0.36
EPHB3P54753 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms