Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.26■□□□□ 0.03
RFC3P40938 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 AC103702.1-201ENST00000548801 2630 ntBASIC15.26■□□□□ 0.03
RFC3P40938 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
RFC3P40938 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
RFC3P40938 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RFC3P40938 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.26■□□□□ 0.03
RFC3P40938 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.25■□□□□ 0.03
RFC3P40938 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
RFC3P40938 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
RFC3P40938 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RFC3P40938 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RFC3P40938 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.25■□□□□ 0.03
RFC3P40938 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
RFC3P40938 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
RFC3P40938 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RFC3P40938 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
RFC3P40938 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RFC3P40938 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
RFC3P40938 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 FAM58DP-201ENST00000428076 619 ntBASIC15.25■□□□□ 0.03
RFC3P40938 SPCS2P4-201ENST00000436160 681 ntBASIC15.25■□□□□ 0.03
RFC3P40938 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.25■□□□□ 0.03
RFC3P40938 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
RFC3P40938 AC069335.1-201ENST00000489972 472 ntBASIC15.25■□□□□ 0.03
RFC3P40938 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.25■□□□□ 0.03
RFC3P40938 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.25■□□□□ 0.03
RFC3P40938 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
RFC3P40938 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 UXT-AS1-201ENST00000590504 1525 ntBASIC15.25■□□□□ 0.03
RFC3P40938 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
RFC3P40938 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.25■□□□□ 0.03
RFC3P40938 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
RFC3P40938 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 CROCCP1-201ENST00000426910 5675 ntBASIC15.25■□□□□ 0.03
RFC3P40938 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
RFC3P40938 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
RFC3P40938 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.25■□□□□ 0.03
RFC3P40938 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFC3P40938 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.24■□□□□ 0.03
RFC3P40938 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
RFC3P40938 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RFC3P40938 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.24■□□□□ 0.03
RFC3P40938 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
RFC3P40938 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.24■□□□□ 0.03
RFC3P40938 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.24■□□□□ 0.03
RFC3P40938 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFC3P40938 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.24■□□□□ 0.03
RFC3P40938 HLA-J-203ENST00000494367 1087 ntBASIC15.24■□□□□ 0.03
RFC3P40938 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.24■□□□□ 0.03
RFC3P40938 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.24■□□□□ 0.03
RFC3P40938 IGHV3-62-201ENST00000520057 340 ntBASIC15.24■□□□□ 0.03
RFC3P40938 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.24■□□□□ 0.03
RFC3P40938 AC025678.2-201ENST00000562061 970 ntBASIC15.24■□□□□ 0.03
RFC3P40938 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms