Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 KRT18P13-201ENST00000400056 1290 ntBASIC16.32■□□□□ 0.2
SHMT2P34897 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.32■□□□□ 0.2
SHMT2P34897 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.32■□□□□ 0.2
SHMT2P34897 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.32■□□□□ 0.2
SHMT2P34897 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.32■□□□□ 0.2
SHMT2P34897 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.32■□□□□ 0.2
SHMT2P34897 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.32■□□□□ 0.2
SHMT2P34897 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
SHMT2P34897 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.32■□□□□ 0.2
SHMT2P34897 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.32■□□□□ 0.2
SHMT2P34897 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.32■□□□□ 0.2
SHMT2P34897 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 AC068137.2-201ENST00000605408 478 ntBASIC16.32■□□□□ 0.2
SHMT2P34897 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SHMT2P34897 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.32■□□□□ 0.2
SHMT2P34897 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SHMT2P34897 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SHMT2P34897 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHMT2P34897 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.31■□□□□ 0.2
SHMT2P34897 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.31■□□□□ 0.2
SHMT2P34897 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.31■□□□□ 0.2
SHMT2P34897 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 SLC22A20-204ENST00000530038 1673 ntBASIC16.31■□□□□ 0.2
SHMT2P34897 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.31■□□□□ 0.2
SHMT2P34897 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SHMT2P34897 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SHMT2P34897 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.31■□□□□ 0.2
SHMT2P34897 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.31■□□□□ 0.2
SHMT2P34897 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
SHMT2P34897 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.31■□□□□ 0.2
SHMT2P34897 MIR3687-2-201ENST00000577708 61 ntBASIC16.31■□□□□ 0.2
SHMT2P34897 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 MIR3687-1-201ENST00000614492 61 ntBASIC16.31■□□□□ 0.2
SHMT2P34897 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.31■□□□□ 0.2
SHMT2P34897 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SHMT2P34897 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.31■□□□□ 0.2
SHMT2P34897 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.31■□□□□ 0.2
SHMT2P34897 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SHMT2P34897 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SHMT2P34897 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.31■□□□□ 0.2
SHMT2P34897 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SHMT2P34897 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SHMT2P34897 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.31■□□□□ 0.2
SHMT2P34897 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SHMT2P34897 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.3■□□□□ 0.2
SHMT2P34897 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.3■□□□□ 0.2
SHMT2P34897 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
SHMT2P34897 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.3■□□□□ 0.2
SHMT2P34897 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.3■□□□□ 0.2
SHMT2P34897 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.3■□□□□ 0.2
SHMT2P34897 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SHMT2P34897 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.3■□□□□ 0.2
SHMT2P34897 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.3■□□□□ 0.2
SHMT2P34897 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.3■□□□□ 0.2
SHMT2P34897 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
SHMT2P34897 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.3■□□□□ 0.2
SHMT2P34897 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SHMT2P34897 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.3■□□□□ 0.2
SHMT2P34897 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHMT2P34897 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms