Protein–RNA interactions for Protein: P18206

VCL, Vinculin, humanhuman

Predictions only

Length 1,134 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCLP18206 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VCLP18206 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
VCLP18206 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.8■□□□□ 0.28
VCLP18206 VN2R19P-201ENST00000442399 1052 ntBASIC16.8■□□□□ 0.28
VCLP18206 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.8■□□□□ 0.28
VCLP18206 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.8■□□□□ 0.28
VCLP18206 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.8■□□□□ 0.28
VCLP18206 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.8■□□□□ 0.28
VCLP18206 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.8■□□□□ 0.28
VCLP18206 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 AC092068.3-201ENST00000587894 2016 ntBASIC16.8■□□□□ 0.28
VCLP18206 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.8■□□□□ 0.28
VCLP18206 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.8■□□□□ 0.28
VCLP18206 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
VCLP18206 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.8■□□□□ 0.28
VCLP18206 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCLP18206 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.79■□□□□ 0.28
VCLP18206 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VCLP18206 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VCLP18206 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.79■□□□□ 0.28
VCLP18206 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.79■□□□□ 0.28
VCLP18206 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 MIR940-201ENST00000401276 94 ntBASIC16.79■□□□□ 0.28
VCLP18206 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
VCLP18206 KRT18P3-201ENST00000451602 1288 ntBASIC16.79■□□□□ 0.28
VCLP18206 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.79■□□□□ 0.28
VCLP18206 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.79■□□□□ 0.28
VCLP18206 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.79■□□□□ 0.28
VCLP18206 AC140113.2-201ENST00000604370 208 ntBASIC16.79■□□□□ 0.28
VCLP18206 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.79■□□□□ 0.28
VCLP18206 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VCLP18206 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.79■□□□□ 0.28
VCLP18206 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 FRMD8P1-201ENST00000440433 1524 ntBASIC16.79■□□□□ 0.28
VCLP18206 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.79■□□□□ 0.28
VCLP18206 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.79■□□□□ 0.28
VCLP18206 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCLP18206 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.78■□□□□ 0.28
VCLP18206 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
VCLP18206 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.78■□□□□ 0.28
VCLP18206 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.78■□□□□ 0.28
VCLP18206 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.78■□□□□ 0.28
VCLP18206 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.78■□□□□ 0.28
VCLP18206 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VCLP18206 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
VCLP18206 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.78■□□□□ 0.28
VCLP18206 PAWRP1-201ENST00000451083 565 ntBASIC16.78■□□□□ 0.28
VCLP18206 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VCLP18206 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.78■□□□□ 0.28
VCLP18206 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.78■□□□□ 0.28
VCLP18206 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.78■□□□□ 0.28
VCLP18206 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.78■□□□□ 0.28
VCLP18206 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VCLP18206 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.78■□□□□ 0.28
VCLP18206 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.78■□□□□ 0.28
VCLP18206 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VCLP18206 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCLP18206 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VCLP18206 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms