Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.1■□□□□ 0.33
TOP3BO95985 VN2R19P-201ENST00000442399 1052 ntBASIC17.1■□□□□ 0.33
TOP3BO95985 HCG4B-203ENST00000450128 991 ntBASIC17.1■□□□□ 0.33
TOP3BO95985 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP3BO95985 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.1■□□□□ 0.33
TOP3BO95985 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.1■□□□□ 0.33
TOP3BO95985 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.1■□□□□ 0.33
TOP3BO95985 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.1■□□□□ 0.33
TOP3BO95985 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.1■□□□□ 0.33
TOP3BO95985 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.1■□□□□ 0.33
TOP3BO95985 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.1■□□□□ 0.33
TOP3BO95985 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.1■□□□□ 0.33
TOP3BO95985 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP3BO95985 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP3BO95985 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP3BO95985 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
TOP3BO95985 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TOP3BO95985 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP3BO95985 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.1■□□□□ 0.33
TOP3BO95985 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.1■□□□□ 0.33
TOP3BO95985 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.1■□□□□ 0.33
TOP3BO95985 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP3BO95985 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.1■□□□□ 0.33
TOP3BO95985 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.1■□□□□ 0.33
TOP3BO95985 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.1■□□□□ 0.33
TOP3BO95985 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
TOP3BO95985 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP3BO95985 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP3BO95985 AC132938.5-201ENST00000624980 1813 ntBASIC17.1■□□□□ 0.33
TOP3BO95985 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP3BO95985 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP3BO95985 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.09■□□□□ 0.33
TOP3BO95985 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TOP3BO95985 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TOP3BO95985 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP3BO95985 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TOP3BO95985 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP3BO95985 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.09■□□□□ 0.33
TOP3BO95985 AC108073.2-201ENST00000464002 357 ntBASIC17.09■□□□□ 0.33
TOP3BO95985 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.09■□□□□ 0.33
TOP3BO95985 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.09■□□□□ 0.33
TOP3BO95985 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.09■□□□□ 0.33
TOP3BO95985 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.09■□□□□ 0.33
TOP3BO95985 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 AC063926.2-201ENST00000623766 1308 ntBASIC17.09■□□□□ 0.33
TOP3BO95985 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 AL353593.2-201ENST00000602529 1483 ntBASIC17.09■□□□□ 0.33
TOP3BO95985 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.09■□□□□ 0.33
TOP3BO95985 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP3BO95985 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
TOP3BO95985 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP3BO95985 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TOP3BO95985 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TOP3BO95985 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
TOP3BO95985 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TOP3BO95985 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.08■□□□□ 0.33
TOP3BO95985 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TOP3BO95985 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TOP3BO95985 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TOP3BO95985 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
TOP3BO95985 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TOP3BO95985 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TOP3BO95985 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TOP3BO95985 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TOP3BO95985 AC009336.1-201ENST00000608941 1553 ntBASIC17.08■□□□□ 0.32
TOP3BO95985 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.08■□□□□ 0.32
TOP3BO95985 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TOP3BO95985 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TOP3BO95985 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TOP3BO95985 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TOP3BO95985 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TOP3BO95985 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.08■□□□□ 0.32
TOP3BO95985 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TOP3BO95985 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TOP3BO95985 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.08■□□□□ 0.32
TOP3BO95985 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.08■□□□□ 0.32
TOP3BO95985 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.08■□□□□ 0.32
TOP3BO95985 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.08■□□□□ 0.32
TOP3BO95985 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms