Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
LMX1BO60663 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
LMX1BO60663 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
LMX1BO60663 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
LMX1BO60663 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.68□□□□□ -0.06
LMX1BO60663 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.68□□□□□ -0.06
LMX1BO60663 LAGE3P1-201ENST00000425356 484 ntBASIC14.68□□□□□ -0.06
LMX1BO60663 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.68□□□□□ -0.06
LMX1BO60663 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 AC002347.1-201ENST00000569543 541 ntBASIC14.68□□□□□ -0.06
LMX1BO60663 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 GID4-202ENST00000376345 1391 ntTSL 3 BASIC14.68□□□□□ -0.06
LMX1BO60663 PAUPAR-201ENST00000630360 2965 ntBASIC14.68□□□□□ -0.06
LMX1BO60663 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LMX1BO60663 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.68□□□□□ -0.06
LMX1BO60663 AL162727.3-201ENST00000635661 2787 ntBASIC14.68□□□□□ -0.06
LMX1BO60663 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.67□□□□□ -0.06
LMX1BO60663 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.67□□□□□ -0.06
LMX1BO60663 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.67□□□□□ -0.06
LMX1BO60663 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.67□□□□□ -0.06
LMX1BO60663 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LMX1BO60663 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 LINC00895-201ENST00000629028 1637 ntBASIC14.67□□□□□ -0.06
LMX1BO60663 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.67□□□□□ -0.06
LMX1BO60663 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.67□□□□□ -0.06
LMX1BO60663 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.67□□□□□ -0.06
LMX1BO60663 AC004832.2-201ENST00000426397 482 ntBASIC14.67□□□□□ -0.06
LMX1BO60663 AC007967.2-201ENST00000432613 625 ntBASIC14.67□□□□□ -0.06
LMX1BO60663 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC14.67□□□□□ -0.06
LMX1BO60663 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.67□□□□□ -0.06
LMX1BO60663 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.67□□□□□ -0.06
LMX1BO60663 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
LMX1BO60663 AL353135.1-201ENST00000606729 504 ntBASIC14.67□□□□□ -0.06
LMX1BO60663 MIR1199-201ENST00000621445 119 ntBASIC14.67□□□□□ -0.06
LMX1BO60663 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC14.67□□□□□ -0.06
LMX1BO60663 AL021920.2-201ENST00000624828 1351 ntBASIC14.67□□□□□ -0.06
LMX1BO60663 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.67□□□□□ -0.06
LMX1BO60663 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 AP002414.3-201ENST00000589352 1468 ntBASIC14.67□□□□□ -0.06
LMX1BO60663 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms