Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 DBET-201ENST00000630918 3363 ntBASIC14.23□□□□□ -0.13
SDCBPO00560 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.23□□□□□ -0.13
SDCBPO00560 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDCBPO00560 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.23□□□□□ -0.13
SDCBPO00560 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 AP002414.2-201ENST00000591780 3365 ntBASIC14.22□□□□□ -0.13
SDCBPO00560 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
SDCBPO00560 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.22□□□□□ -0.13
SDCBPO00560 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.22□□□□□ -0.13
SDCBPO00560 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
SDCBPO00560 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
SDCBPO00560 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
SDCBPO00560 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC14.22□□□□□ -0.13
SDCBPO00560 HCG4P8-203ENST00000443049 980 ntBASIC14.22□□□□□ -0.13
SDCBPO00560 KRT16P4-201ENST00000453883 522 ntBASIC14.22□□□□□ -0.13
SDCBPO00560 FOSL1P1-201ENST00000511041 816 ntBASIC14.22□□□□□ -0.13
SDCBPO00560 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.22□□□□□ -0.13
SDCBPO00560 MIR3652-201ENST00000579335 131 ntBASIC14.22□□□□□ -0.13
SDCBPO00560 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
SDCBPO00560 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC14.22□□□□□ -0.13
SDCBPO00560 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.22□□□□□ -0.13
SDCBPO00560 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SDCBPO00560 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.22□□□□□ -0.13
SDCBPO00560 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
SDCBPO00560 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC14.22□□□□□ -0.13
SDCBPO00560 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDCBPO00560 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.22□□□□□ -0.13
SDCBPO00560 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC14.22□□□□□ -0.13
SDCBPO00560 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
SDCBPO00560 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.21□□□□□ -0.13
SDCBPO00560 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.21□□□□□ -0.13
SDCBPO00560 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SDCBPO00560 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.21□□□□□ -0.13
SDCBPO00560 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
SDCBPO00560 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.21□□□□□ -0.13
SDCBPO00560 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
SDCBPO00560 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.13
SDCBPO00560 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 SPDYE21P-201ENST00000413323 827 ntBASIC14.21□□□□□ -0.13
SDCBPO00560 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC14.21□□□□□ -0.13
SDCBPO00560 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.21□□□□□ -0.13
SDCBPO00560 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDCBPO00560 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
SDCBPO00560 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms