Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 NMU-202ENST00000505262 693 ntTSL 3 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 THTPA-204ENST00000554970 569 ntTSL 4 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 THTPA-206ENST00000556015 535 ntTSL 3 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 CD7-202ENST00000578509 925 ntTSL 3 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC21.35■■□□□ 1.01
SMC4Q9NTJ3 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 ME2P1-201ENST00000426028 1970 ntBASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 MIR3909-201ENST00000579518 119 ntBASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 AL009183.1-201ENST00000603760 355 ntBASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
SMC4Q9NTJ3 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 AC140658.5-201ENST00000438532 169 ntBASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 AC074386.1-202ENST00000463561 864 ntBASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 PGAM5P1-201ENST00000518923 814 ntBASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 AC068137.2-201ENST00000605408 478 ntBASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 AC021097.1-201ENST00000607902 574 ntBASIC21.33■■□□□ 1.01
SMC4Q9NTJ3 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms