Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
CDCA3Q99618 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDCA3Q99618 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CDCA3Q99618 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDCA3Q99618 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.14■□□□□ 0.33
CDCA3Q99618 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDCA3Q99618 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.13■□□□□ 0.33
CDCA3Q99618 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CDCA3Q99618 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDCA3Q99618 FO393414.2-201ENST00000405153 598 ntBASIC17.13■□□□□ 0.33
CDCA3Q99618 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CDCA3Q99618 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDCA3Q99618 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.13■□□□□ 0.33
CDCA3Q99618 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.13■□□□□ 0.33
CDCA3Q99618 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.13■□□□□ 0.33
CDCA3Q99618 AC104989.1-201ENST00000519711 778 ntBASIC17.13■□□□□ 0.33
CDCA3Q99618 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.13■□□□□ 0.33
CDCA3Q99618 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.13■□□□□ 0.33
CDCA3Q99618 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.13■□□□□ 0.33
CDCA3Q99618 RARRES2P5-201ENST00000564013 466 ntBASIC17.13■□□□□ 0.33
CDCA3Q99618 AC008735.3-201ENST00000596646 500 ntBASIC17.13■□□□□ 0.33
CDCA3Q99618 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 MIR6775-201ENST00000617557 69 ntBASIC17.13■□□□□ 0.33
CDCA3Q99618 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.13■□□□□ 0.33
CDCA3Q99618 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CDCA3Q99618 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.13■□□□□ 0.33
CDCA3Q99618 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC17.13■□□□□ 0.33
CDCA3Q99618 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDCA3Q99618 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CDCA3Q99618 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CDCA3Q99618 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDCA3Q99618 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.12■□□□□ 0.33
CDCA3Q99618 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDCA3Q99618 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.12■□□□□ 0.33
CDCA3Q99618 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.12■□□□□ 0.33
CDCA3Q99618 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.12■□□□□ 0.33
CDCA3Q99618 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.12■□□□□ 0.33
CDCA3Q99618 AL606495.2-201ENST00000605867 535 ntBASIC17.12■□□□□ 0.33
CDCA3Q99618 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDCA3Q99618 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDCA3Q99618 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.12■□□□□ 0.33
CDCA3Q99618 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
CDCA3Q99618 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.12■□□□□ 0.33
CDCA3Q99618 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CDCA3Q99618 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDCA3Q99618 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.11■□□□□ 0.33
CDCA3Q99618 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.11■□□□□ 0.33
CDCA3Q99618 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.11■□□□□ 0.33
CDCA3Q99618 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.11■□□□□ 0.33
CDCA3Q99618 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.11■□□□□ 0.33
CDCA3Q99618 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 BTNL10-201ENST00000595971 695 ntBASIC17.11■□□□□ 0.33
CDCA3Q99618 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.11■□□□□ 0.33
CDCA3Q99618 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms