Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.61■□□□□ 0.73
BRF1Q92994 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRF1Q92994 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRF1Q92994 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.61■□□□□ 0.73
BRF1Q92994 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BRF1Q92994 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BRF1Q92994 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.6■□□□□ 0.73
BRF1Q92994 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.6■□□□□ 0.73
BRF1Q92994 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
BRF1Q92994 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 AC007967.2-201ENST00000432613 625 ntBASIC19.6■□□□□ 0.73
BRF1Q92994 RHOQP3-201ENST00000437982 621 ntBASIC19.6■□□□□ 0.73
BRF1Q92994 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.6■□□□□ 0.73
BRF1Q92994 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.6■□□□□ 0.73
BRF1Q92994 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
BRF1Q92994 AC064836.3-201ENST00000607928 673 ntBASIC19.6■□□□□ 0.73
BRF1Q92994 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
BRF1Q92994 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.6■□□□□ 0.73
BRF1Q92994 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
BRF1Q92994 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BRF1Q92994 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
BRF1Q92994 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
BRF1Q92994 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.59■□□□□ 0.73
BRF1Q92994 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
BRF1Q92994 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
BRF1Q92994 KRT18P2-201ENST00000447938 1258 ntBASIC19.59■□□□□ 0.73
BRF1Q92994 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
BRF1Q92994 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.59■□□□□ 0.73
BRF1Q92994 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.59■□□□□ 0.73
BRF1Q92994 AC018845.2-201ENST00000568326 409 ntBASIC19.59■□□□□ 0.73
BRF1Q92994 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.59■□□□□ 0.73
BRF1Q92994 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.59■□□□□ 0.73
BRF1Q92994 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.59■□□□□ 0.73
BRF1Q92994 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.59■□□□□ 0.73
BRF1Q92994 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
BRF1Q92994 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
BRF1Q92994 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BRF1Q92994 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
BRF1Q92994 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.59■□□□□ 0.73
BRF1Q92994 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
BRF1Q92994 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.59■□□□□ 0.73
BRF1Q92994 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BRF1Q92994 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.58■□□□□ 0.73
BRF1Q92994 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
BRF1Q92994 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.58■□□□□ 0.73
BRF1Q92994 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
BRF1Q92994 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BRF1Q92994 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
BRF1Q92994 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
BRF1Q92994 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
BRF1Q92994 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
BRF1Q92994 RNU1-129P-201ENST00000384064 167 ntBASIC19.58■□□□□ 0.72
BRF1Q92994 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.58■□□□□ 0.72
BRF1Q92994 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.58■□□□□ 0.72
BRF1Q92994 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.58■□□□□ 0.72
BRF1Q92994 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.58■□□□□ 0.72
BRF1Q92994 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.58■□□□□ 0.72
BRF1Q92994 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.58■□□□□ 0.72
BRF1Q92994 AL031432.2-201ENST00000566714 459 ntBASIC19.58■□□□□ 0.72
BRF1Q92994 AL928711.1-201ENST00000570165 459 ntBASIC19.58■□□□□ 0.72
BRF1Q92994 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.58■□□□□ 0.72
BRF1Q92994 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.58■□□□□ 0.72
BRF1Q92994 U1.21-201ENST00000580816 167 ntBASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms