Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 KRT8P39-201ENST00000396270 1433 ntBASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 KRT18P3-201ENST00000451602 1288 ntBASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 AC140113.2-201ENST00000604370 208 ntBASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 AC004877.2-201ENST00000623941 599 ntBASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE3Q6ZMZ3 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 HLA-A-202ENST00000376806 1854 ntBASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 BCAR1-209ENST00000546196 1340 ntBASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 MIR940-201ENST00000401276 94 ntBASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 KRT18P2-201ENST00000447938 1258 ntBASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 AC018845.2-201ENST00000568326 409 ntBASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.61■□□□□ 0.73
SYNE3Q6ZMZ3 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms