Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.49■□□□□ 0.71
MRE11P49959 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
MRE11P49959 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MRE11P49959 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MRE11P49959 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MRE11P49959 KRT18P65-201ENST00000439811 1286 ntBASIC19.49■□□□□ 0.71
MRE11P49959 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.49■□□□□ 0.71
MRE11P49959 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.49■□□□□ 0.71
MRE11P49959 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.49■□□□□ 0.71
MRE11P49959 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.49■□□□□ 0.71
MRE11P49959 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MRE11P49959 AC140113.2-201ENST00000604370 208 ntBASIC19.49■□□□□ 0.71
MRE11P49959 AL121772.3-201ENST00000610840 674 ntBASIC19.49■□□□□ 0.71
MRE11P49959 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
MRE11P49959 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MRE11P49959 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.49■□□□□ 0.71
MRE11P49959 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MRE11P49959 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MRE11P49959 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC19.49■□□□□ 0.71
MRE11P49959 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.49■□□□□ 0.71
MRE11P49959 EGFEM1P-202ENST00000431685 1563 ntBASIC19.49■□□□□ 0.71
MRE11P49959 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MRE11P49959 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC19.49■□□□□ 0.71
MRE11P49959 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
MRE11P49959 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
MRE11P49959 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
MRE11P49959 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
MRE11P49959 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.48■□□□□ 0.71
MRE11P49959 AP002414.2-201ENST00000591780 3365 ntBASIC19.48■□□□□ 0.71
MRE11P49959 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.48■□□□□ 0.71
MRE11P49959 HTR5BP-201ENST00000430851 1154 ntBASIC19.48■□□□□ 0.71
MRE11P49959 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.48■□□□□ 0.71
MRE11P49959 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.48■□□□□ 0.71
MRE11P49959 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
MRE11P49959 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.48■□□□□ 0.71
MRE11P49959 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
MRE11P49959 AC010240.3-201ENST00000607688 395 ntBASIC19.48■□□□□ 0.71
MRE11P49959 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.48■□□□□ 0.71
MRE11P49959 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
MRE11P49959 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC19.48■□□□□ 0.71
MRE11P49959 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.48■□□□□ 0.71
MRE11P49959 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.48■□□□□ 0.71
MRE11P49959 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
MRE11P49959 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MRE11P49959 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19.47■□□□□ 0.71
MRE11P49959 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC19.47■□□□□ 0.71
MRE11P49959 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
MRE11P49959 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.47■□□□□ 0.71
MRE11P49959 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC19.47■□□□□ 0.71
MRE11P49959 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
MRE11P49959 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
MRE11P49959 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.47■□□□□ 0.71
MRE11P49959 STARP1-201ENST00000397973 869 ntBASIC19.47■□□□□ 0.71
MRE11P49959 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
MRE11P49959 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.47■□□□□ 0.71
MRE11P49959 AC002558.1-201ENST00000488906 803 ntBASIC19.47■□□□□ 0.71
MRE11P49959 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.47■□□□□ 0.71
MRE11P49959 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.47■□□□□ 0.71
MRE11P49959 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
MRE11P49959 AL023803.3-201ENST00000615559 522 ntBASIC19.47■□□□□ 0.71
MRE11P49959 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
MRE11P49959 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
MRE11P49959 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 IL9RP2-201ENST00000423948 1312 ntBASIC19.47■□□□□ 0.71
MRE11P49959 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
MRE11P49959 AP005117.1-202ENST00000581724 1908 ntBASIC19.47■□□□□ 0.71
MRE11P49959 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.47■□□□□ 0.71
MRE11P49959 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.47■□□□□ 0.71
MRE11P49959 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC19.47■□□□□ 0.71
MRE11P49959 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
MRE11P49959 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MRE11P49959 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC19.46■□□□□ 0.71
MRE11P49959 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MRE11P49959 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.46■□□□□ 0.71
MRE11P49959 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.46■□□□□ 0.71
MRE11P49959 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MRE11P49959 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MRE11P49959 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms